Protein–RNA interactions for Protein: Q9H4P4

RNF41, E3 ubiquitin-protein ligase NRDP1, humanhuman

Predicted RBP Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF41Q9H4P4 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC21.14■□□□□ 0.97
RNF41Q9H4P4 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.97
RNF41Q9H4P4 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC21.14■□□□□ 0.97
RNF41Q9H4P4 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
RNF41Q9H4P4 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
RNF41Q9H4P4 PLEKHG5-206ENST00000377748 5221 ntAPPRIS ALT2 TSL 2 BASIC21.14■□□□□ 0.97
RNF41Q9H4P4 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
RNF41Q9H4P4 AC100803.2-201ENST00000562459 1963 ntBASIC21.14■□□□□ 0.97
RNF41Q9H4P4 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
RNF41Q9H4P4 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC21.13■□□□□ 0.97
RNF41Q9H4P4 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
RNF41Q9H4P4 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC21.13■□□□□ 0.97
RNF41Q9H4P4 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
RNF41Q9H4P4 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
RNF41Q9H4P4 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
RNF41Q9H4P4 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
RNF41Q9H4P4 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
RNF41Q9H4P4 CCS-201ENST00000310190 942 ntTSL 5 BASIC21.13■□□□□ 0.97
RNF41Q9H4P4 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
RNF41Q9H4P4 AC096633.1-201ENST00000422446 749 ntBASIC21.13■□□□□ 0.97
RNF41Q9H4P4 DANCR-204ENST00000444958 709 ntTSL 3 BASIC21.13■□□□□ 0.97
RNF41Q9H4P4 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC21.13■□□□□ 0.97
RNF41Q9H4P4 AC009533.2-201ENST00000543664 586 ntBASIC21.13■□□□□ 0.97
RNF41Q9H4P4 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC21.13■□□□□ 0.97
RNF41Q9H4P4 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC21.13■□□□□ 0.97
RNF41Q9H4P4 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC21.13■□□□□ 0.97
RNF41Q9H4P4 ZNF772-206ENST00000600175 737 ntTSL 2 BASIC21.13■□□□□ 0.97
RNF41Q9H4P4 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC21.13■□□□□ 0.97
RNF41Q9H4P4 ZNFX1-203ENST00000371754 5235 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
RNF41Q9H4P4 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC21.13■□□□□ 0.97
RNF41Q9H4P4 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC21.13■□□□□ 0.97
RNF41Q9H4P4 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC21.13■□□□□ 0.97
RNF41Q9H4P4 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC21.13■□□□□ 0.97
RNF41Q9H4P4 TBC1D3P5-201ENST00000579401 1545 ntBASIC21.13■□□□□ 0.97
RNF41Q9H4P4 MED29-202ENST00000594368 1471 ntTSL 2 BASIC21.13■□□□□ 0.97
RNF41Q9H4P4 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
RNF41Q9H4P4 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
RNF41Q9H4P4 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
RNF41Q9H4P4 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC21.12■□□□□ 0.97
RNF41Q9H4P4 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
RNF41Q9H4P4 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC21.12■□□□□ 0.97
RNF41Q9H4P4 FAM91A1-201ENST00000334705 5511 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
RNF41Q9H4P4 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
RNF41Q9H4P4 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
RNF41Q9H4P4 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC21.12■□□□□ 0.97
RNF41Q9H4P4 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
RNF41Q9H4P4 TLE3-214ENST00000558939 6004 ntAPPRIS P4 TSL 1 (best) BASIC21.12■□□□□ 0.97
RNF41Q9H4P4 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
RNF41Q9H4P4 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC21.12■□□□□ 0.97
RNF41Q9H4P4 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC21.12■□□□□ 0.97
RNF41Q9H4P4 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC21.12■□□□□ 0.97
RNF41Q9H4P4 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
RNF41Q9H4P4 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC21.12■□□□□ 0.97
RNF41Q9H4P4 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
RNF41Q9H4P4 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC21.12■□□□□ 0.97
RNF41Q9H4P4 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
RNF41Q9H4P4 ARMC12-202ENST00000373866 1254 ntAPPRIS P1 TSL 3 BASIC21.12■□□□□ 0.97
RNF41Q9H4P4 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC21.12■□□□□ 0.97
RNF41Q9H4P4 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
RNF41Q9H4P4 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
RNF41Q9H4P4 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC21.12■□□□□ 0.97
RNF41Q9H4P4 PHGR1-201ENST00000448599 436 ntAPPRIS P1 TSL 5 BASIC21.12■□□□□ 0.97
RNF41Q9H4P4 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
RNF41Q9H4P4 AC139749.1-201ENST00000534584 1094 ntTSL 3 BASIC21.12■□□□□ 0.97
RNF41Q9H4P4 PNN-202ENST00000553331 656 ntTSL 3 BASIC21.12■□□□□ 0.97
RNF41Q9H4P4 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC21.12■□□□□ 0.97
RNF41Q9H4P4 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC21.12■□□□□ 0.97
RNF41Q9H4P4 AL513523.2-201ENST00000633218 660 ntTSL 3 BASIC21.12■□□□□ 0.97
RNF41Q9H4P4 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC21.12■□□□□ 0.97
RNF41Q9H4P4 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC21.12■□□□□ 0.97
RNF41Q9H4P4 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
RNF41Q9H4P4 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
RNF41Q9H4P4 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC21.12■□□□□ 0.97
RNF41Q9H4P4 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
RNF41Q9H4P4 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
RNF41Q9H4P4 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
RNF41Q9H4P4 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC21.12■□□□□ 0.97
RNF41Q9H4P4 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC21.12■□□□□ 0.97
RNF41Q9H4P4 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
RNF41Q9H4P4 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
RNF41Q9H4P4 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC21.12■□□□□ 0.97
RNF41Q9H4P4 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC21.12■□□□□ 0.97
RNF41Q9H4P4 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
RNF41Q9H4P4 AQP8-201ENST00000219660 1359 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
RNF41Q9H4P4 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
RNF41Q9H4P4 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC21.11■□□□□ 0.97
RNF41Q9H4P4 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
RNF41Q9H4P4 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
RNF41Q9H4P4 HSD11B1L-223ENST00000616276 1580 ntAPPRIS ALT2 TSL 5 BASIC21.11■□□□□ 0.97
RNF41Q9H4P4 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
RNF41Q9H4P4 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
RNF41Q9H4P4 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC21.11■□□□□ 0.97
RNF41Q9H4P4 POM121L3P-201ENST00000419331 1163 ntBASIC21.11■□□□□ 0.97
RNF41Q9H4P4 MEG3-211ENST00000452514 461 ntTSL 3 BASIC21.11■□□□□ 0.97
RNF41Q9H4P4 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
RNF41Q9H4P4 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC21.11■□□□□ 0.97
RNF41Q9H4P4 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC21.11■□□□□ 0.97
RNF41Q9H4P4 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC21.11■□□□□ 0.97
RNF41Q9H4P4 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC21.11■□□□□ 0.97
RNF41Q9H4P4 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 40.7 ms