Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
CCDC42Q96M95 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC19.37■□□□□ 0.69
CCDC42Q96M95 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC19.37■□□□□ 0.69
CCDC42Q96M95 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CCDC42Q96M95 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CCDC42Q96M95 LRP4-201ENST00000378623 8076 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CCDC42Q96M95 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
CCDC42Q96M95 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
CCDC42Q96M95 AC007663.1-201ENST00000438948 1240 ntBASIC19.37■□□□□ 0.69
CCDC42Q96M95 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CCDC42Q96M95 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC19.37■□□□□ 0.69
CCDC42Q96M95 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
CCDC42Q96M95 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CCDC42Q96M95 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC19.37■□□□□ 0.69
CCDC42Q96M95 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC19.37■□□□□ 0.69
CCDC42Q96M95 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
CCDC42Q96M95 BMPER-201ENST00000297161 5031 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CCDC42Q96M95 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CCDC42Q96M95 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC19.37■□□□□ 0.69
CCDC42Q96M95 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC19.37■□□□□ 0.69
CCDC42Q96M95 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC19.37■□□□□ 0.69
CCDC42Q96M95 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC19.37■□□□□ 0.69
CCDC42Q96M95 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CCDC42Q96M95 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CCDC42Q96M95 KRT13-201ENST00000246635 1699 ntAPPRIS P4 TSL 1 (best) BASIC19.36■□□□□ 0.69
CCDC42Q96M95 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
CCDC42Q96M95 AL138688.1-201ENST00000624851 1594 ntBASIC19.36■□□□□ 0.69
CCDC42Q96M95 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
CCDC42Q96M95 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
CCDC42Q96M95 AP001094.4-201ENST00000579008 2176 ntBASIC19.36■□□□□ 0.69
CCDC42Q96M95 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC19.36■□□□□ 0.69
CCDC42Q96M95 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
CCDC42Q96M95 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC19.36■□□□□ 0.69
CCDC42Q96M95 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC19.36■□□□□ 0.69
CCDC42Q96M95 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC19.36■□□□□ 0.69
CCDC42Q96M95 RAI1-201ENST00000353383 7662 ntAPPRIS P2 TSL 1 (best) BASIC19.36■□□□□ 0.69
CCDC42Q96M95 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC19.36■□□□□ 0.69
CCDC42Q96M95 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CCDC42Q96M95 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC19.36■□□□□ 0.69
CCDC42Q96M95 MME-217ENST00000616757 1315 ntTSL 5 BASIC19.36■□□□□ 0.69
CCDC42Q96M95 AC022898.2-201ENST00000616822 1312 ntBASIC19.36■□□□□ 0.69
CCDC42Q96M95 ADGRG2-202ENST00000354791 4494 ntTSL 5 BASIC19.36■□□□□ 0.69
CCDC42Q96M95 MDFI-202ENST00000373050 809 ntTSL 2 BASIC19.36■□□□□ 0.69
CCDC42Q96M95 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
CCDC42Q96M95 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC19.36■□□□□ 0.69
CCDC42Q96M95 DENND3-207ENST00000518347 850 ntTSL 2 BASIC19.36■□□□□ 0.69
CCDC42Q96M95 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC19.36■□□□□ 0.69
CCDC42Q96M95 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CCDC42Q96M95 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
CCDC42Q96M95 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC19.36■□□□□ 0.69
CCDC42Q96M95 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
CCDC42Q96M95 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC19.36■□□□□ 0.69
CCDC42Q96M95 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC19.36■□□□□ 0.69
CCDC42Q96M95 AD000864.1-201ENST00000624076 2295 ntBASIC19.36■□□□□ 0.69
CCDC42Q96M95 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
CCDC42Q96M95 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC19.36■□□□□ 0.69
CCDC42Q96M95 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CCDC42Q96M95 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CCDC42Q96M95 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CCDC42Q96M95 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CCDC42Q96M95 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CCDC42Q96M95 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC19.36■□□□□ 0.69
CCDC42Q96M95 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
CCDC42Q96M95 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
CCDC42Q96M95 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CCDC42Q96M95 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CCDC42Q96M95 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
CCDC42Q96M95 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CCDC42Q96M95 COL27A1-201ENST00000356083 7790 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CCDC42Q96M95 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC19.35■□□□□ 0.69
CCDC42Q96M95 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC19.35■□□□□ 0.69
CCDC42Q96M95 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC19.35■□□□□ 0.69
CCDC42Q96M95 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CCDC42Q96M95 AC026954.2-202ENST00000575474 2571 ntAPPRIS P5 TSL 5 BASIC19.35■□□□□ 0.69
CCDC42Q96M95 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CCDC42Q96M95 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC19.35■□□□□ 0.69
CCDC42Q96M95 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC19.35■□□□□ 0.69
CCDC42Q96M95 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
CCDC42Q96M95 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC19.35■□□□□ 0.69
CCDC42Q96M95 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC19.35■□□□□ 0.69
CCDC42Q96M95 REEP1-209ENST00000541910 969 ntTSL 2 BASIC19.35■□□□□ 0.69
CCDC42Q96M95 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC19.35■□□□□ 0.69
CCDC42Q96M95 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC19.35■□□□□ 0.69
CCDC42Q96M95 AL354712.1-201ENST00000563570 477 ntTSL 3 BASIC19.35■□□□□ 0.69
CCDC42Q96M95 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC19.35■□□□□ 0.69
CCDC42Q96M95 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC19.35■□□□□ 0.69
CCDC42Q96M95 Z99916.2-201ENST00000604037 246 ntBASIC19.35■□□□□ 0.69
CCDC42Q96M95 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC19.35■□□□□ 0.69
CCDC42Q96M95 ENC1-207ENST00000618628 5657 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
CCDC42Q96M95 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC19.35■□□□□ 0.69
CCDC42Q96M95 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CCDC42Q96M95 ZSWIM8-223ENST00000605216 6004 ntAPPRIS P2 TSL 1 (best) BASIC19.35■□□□□ 0.69
CCDC42Q96M95 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CCDC42Q96M95 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CCDC42Q96M95 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CCDC42Q96M95 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC19.35■□□□□ 0.69
CCDC42Q96M95 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CCDC42Q96M95 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
CCDC42Q96M95 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CCDC42Q96M95 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 39.6 ms