Protein–RNA interactions for Protein: Q92900

UPF1, Regulator of nonsense transcripts 1, humanhuman

Known RBP eCLIP

Length 1,129 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1Q92900 DUSP22-207ENST00000603726 587 ntTSL 518.26■□□□□ 0.512e-8■■□□□ 13.5
UPF1Q92900 SELENOW-211ENST00000599874 636 ntTSL 222.87■■□□□ 1.252e-9■■□□□ 13.5
UPF1Q92900 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC18.31■□□□□ 0.523e-7■■□□□ 13.5
UPF1Q92900 WDTC1-202ENST00000361771 4275 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.313e-7■■□□□ 13.5
UPF1Q92900 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC23.58■■□□□ 1.362e-7■■□□□ 13.5
UPF1Q92900 DVL1-202ENST00000378891 2926 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.282e-7■■□□□ 13.5
UPF1Q92900 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC33.56■■■□□ 2.966e-7■■□□□ 13.5
UPF1Q92900 ROGDI-209ENST00000587843 1362 ntTSL 233.35■■■□□ 2.936e-7■■□□□ 13.5
UPF1Q92900 SH2B1-209ENST00000563674 719 ntTSL 332.93■■■□□ 2.863e-10■■□□□ 13.5
UPF1Q92900 BAG1-211ENST00000635077 658 ntTSL 331.98■■■□□ 2.716e-7■■□□□ 13.5
UPF1Q92900 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC31.82■■■□□ 2.686e-7■■□□□ 13.5
UPF1Q92900 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC30.14■■■□□ 2.426e-7■■□□□ 13.5
UPF1Q92900 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC30.13■■■□□ 2.413e-10■■□□□ 13.5
UPF1Q92900 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC28.38■■■□□ 2.136e-7■■□□□ 13.5
UPF1Q92900 ROGDI-210ENST00000588201 1530 ntTSL 528.14■■■□□ 2.16e-7■■□□□ 13.5
UPF1Q92900 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC27.62■■■□□ 2.016e-7■■□□□ 13.5
UPF1Q92900 SH2B1-215ENST00000569651 821 ntTSL 526.49■■□□□ 1.833e-10■■□□□ 13.5
UPF1Q92900 BAG1-208ENST00000488499 485 ntTSL 325.7■■□□□ 1.76e-7■■□□□ 13.5
UPF1Q92900 DECR2-205ENST00000439661 1618 ntTSL 225.04■■□□□ 1.66e-7■■□□□ 13.5
UPF1Q92900 ROGDI-207ENST00000587377 1394 ntTSL 524.24■■□□□ 1.476e-7■■□□□ 13.5
UPF1Q92900 DECR2-204ENST00000437024 1738 ntTSL 224.13■■□□□ 1.456e-7■■□□□ 13.5
UPF1Q92900 BAG1-203ENST00000379707 1396 ntTSL 1 (best)23.51■■□□□ 1.356e-7■■□□□ 13.5
UPF1Q92900 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC22.87■■□□□ 1.256e-7■■□□□ 13.5
UPF1Q92900 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC21.56■■□□□ 1.042e-10■■□□□ 13.5
UPF1Q92900 DECR2-209ENST00000461947 1017 ntTSL 521.4■■□□□ 1.026e-7■■□□□ 13.5
UPF1Q92900 SH2B1-206ENST00000545570 1488 ntTSL 2 BASIC21.17■□□□□ 0.983e-10■■□□□ 13.5
UPF1Q92900 DECR2-207ENST00000461749 2062 ntTSL 221.1■□□□□ 0.976e-7■■□□□ 13.5
UPF1Q92900 ROGDI-213ENST00000591292 2684 ntTSL 221.04■□□□□ 0.966e-7■■□□□ 13.5
UPF1Q92900 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC20.68■□□□□ 0.96e-7■■□□□ 13.5
UPF1Q92900 LITAF-217ENST00000575426 582 ntTSL 520.58■□□□□ 0.896e-7■■□□□ 13.5
UPF1Q92900 BAG1-207ENST00000473781 681 ntTSL 319.88■□□□□ 0.776e-7■■□□□ 13.5
UPF1Q92900 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.776e-7■■□□□ 13.5
UPF1Q92900 MAPT-209ENST00000446361 5345 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.776e-7■■□□□ 13.5
UPF1Q92900 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC19■□□□□ 0.633e-10■■□□□ 13.5
UPF1Q92900 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.533e-10■■□□□ 13.5
UPF1Q92900 MAPT-201ENST00000262410 6762 ntAPPRIS P4 TSL 1 (best) BASIC17.02■□□□□ 0.326e-7■■□□□ 13.5
UPF1Q92900 MAPT-205ENST00000351559 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.246e-7■■□□□ 13.5
UPF1Q92900 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC16.25■□□□□ 0.193e-10■■□□□ 13.5
UPF1Q92900 GIGYF1-201ENST00000275732 6530 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.136e-7■■□□□ 13.5
UPF1Q92900 BAG1-210ENST00000634734 3786 ntAPPRIS ALT2 TSL 1 (best) BASIC15.85■□□□□ 0.136e-7■■□□□ 13.5
UPF1Q92900 SH2B1-201ENST00000322610 3095 ntTSL 2 BASIC15.41■□□□□ 0.063e-10■■□□□ 13.5
UPF1Q92900 GATA4-202ENST00000526021 1064 ntTSL 215.25■□□□□ 0.036e-7■■□□□ 13.5
UPF1Q92900 MAPT-204ENST00000344290 6816 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.036e-7■■□□□ 13.5
UPF1Q92900 LITAF-207ENST00000571459 677 ntTSL 5 BASIC13.69□□□□□ -0.226e-7■■□□□ 13.5
UPF1Q92900 TRIB1-201ENST00000311922 3635 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.236e-7■■□□□ 13.5
UPF1Q92900 SPEN-201ENST00000375759 12232 ntAPPRIS P1 TSL 1 (best) BASIC9.6□□□□□ -0.873e-7■■□□□ 13.5
UPF1Q92900 SLC25A51-203ENST00000496760 1871 ntTSL 1 (best)25.82■■□□□ 1.722e-6■■□□□ 13.5
UPF1Q92900 DVL1-201ENST00000378888 3239 ntAPPRIS ALT1 TSL 5 BASIC22.74■■□□□ 1.232e-7■■□□□ 13.5
UPF1Q92900 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.57e-8■■□□□ 13.5
UPF1Q92900 C8orf33-204ENST00000530455 2676 ntTSL 1 (best)18.16■□□□□ 0.57e-8■■□□□ 13.5
UPF1Q92900 AP1G1-218ENST00000569748 4554 ntAPPRIS P3 TSL 2 BASIC12.27□□□□□ -0.454e-8■■□□□ 13.4
UPF1Q92900 AP1G1-207ENST00000564155 2723 ntTSL 1 (best) BASIC5.92□□□□□ -1.464e-8■■□□□ 13.4
UPF1Q92900 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC26.73■■□□□ 1.873e-8■■□□□ 13.4
UPF1Q92900 SNHG15-205ENST00000580458 710 ntTSL 2 BASIC19.67■□□□□ 0.743e-8■■□□□ 13.4
UPF1Q92900 SNHG15-210ENST00000585030 953 ntTSL 3 BASIC18.23■□□□□ 0.513e-8■■□□□ 13.4
UPF1Q92900 SNHG15-204ENST00000579383 731 ntTSL 217.63■□□□□ 0.413e-8■■□□□ 13.4
UPF1Q92900 SNHG15-201ENST00000438705 509 ntTSL 3 BASIC16.91■□□□□ 0.33e-8■■□□□ 13.4
UPF1Q92900 SNHG15-202ENST00000577700 3116 ntTSL 2 BASIC15.9■□□□□ 0.143e-8■■□□□ 13.4
UPF1Q92900 SNHG15-208ENST00000584327 505 ntTSL 3 BASIC14.71□□□□□ -0.053e-8■■□□□ 13.4
UPF1Q92900 ATXN2L-219ENST00000566007 471 ntTSL 313.36□□□□□ -0.272e-16■■□□□ 13.4
UPF1Q92900 ATXN2L-215ENST00000564304 3514 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.322e-16■■□□□ 13.4
UPF1Q92900 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.271e-6■■□□□ 13.4
UPF1Q92900 TMEM14B-203ENST00000460341 565 ntTSL 424.72■■□□□ 1.558e-10■■□□□ 13.4
UPF1Q92900 TMEM14B-206ENST00000463448 1589 ntTSL 1 (best)20.97■□□□□ 0.958e-10■■□□□ 13.4
UPF1Q92900 TMEM14B-209ENST00000473166 752 ntTSL 320.86■□□□□ 0.938e-10■■□□□ 13.4
UPF1Q92900 AL024498.2-201ENST00000480294 1589 ntAPPRIS P1 TSL 2 BASIC19.37■□□□□ 0.698e-10■■□□□ 13.4
UPF1Q92900 TMEM14B-208ENST00000467317 1224 ntTSL 2 BASIC19.2■□□□□ 0.668e-10■■□□□ 13.4
UPF1Q92900 TMEM14B-215ENST00000481240 1032 ntTSL 2 BASIC18.85■□□□□ 0.618e-10■■□□□ 13.4
UPF1Q92900 TMEM14B-213ENST00000478732 344 ntTSL 518.8■□□□□ 0.68e-10■■□□□ 13.4
UPF1Q92900 TMEM14B-211ENST00000473807 559 ntTSL 418.49■□□□□ 0.558e-10■■□□□ 13.4
UPF1Q92900 TMEM14B-205ENST00000463100 502 ntTSL 416.33■□□□□ 0.28e-10■■□□□ 13.4
UPF1Q92900 TMEM14B-207ENST00000467229 483 ntTSL 310.21□□□□□ -0.778e-10■■□□□ 13.4
UPF1Q92900 RASSF5-205ENST00000581503 5586 ntTSL 1 (best) BASIC16.88■□□□□ 0.291e-6■■□□□ 13.4
UPF1Q92900 RASSF5-201ENST00000577571 3496 ntTSL 1 (best) BASIC15.51■□□□□ 0.071e-6■■□□□ 13.4
UPF1Q92900 RASSF5-206ENST00000581888 4499 ntTSL 212.32□□□□□ -0.441e-6■■□□□ 13.4
UPF1Q92900 RASSF5-203ENST00000579942 3279 ntTSL 211□□□□□ -0.651e-6■■□□□ 13.4
UPF1Q92900 RASSF5-209ENST00000636182 3427 ntTSL 5 BASIC9.76□□□□□ -0.851e-6■■□□□ 13.4
UPF1Q92900 TMEM214-205ENST00000434544 834 ntTSL 224.68■■□□□ 1.546e-12■■□□□ 13.4
UPF1Q92900 ACTN1-214ENST00000555075 828 ntTSL 316.5■□□□□ 0.236e-12■■□□□ 13.4
UPF1Q92900 TMEM214-210ENST00000469445 900 ntTSL 215.77■□□□□ 0.126e-12■■□□□ 13.4
UPF1Q92900 ACTN1-211ENST00000553882 2636 ntTSL 214.56□□□□□ -0.086e-12■■□□□ 13.4
UPF1Q92900 ACTN1-202ENST00000376839 2824 ntTSL 2 BASIC12.83□□□□□ -0.366e-12■■□□□ 13.4
UPF1Q92900 ACTN1-204ENST00000438964 3043 ntTSL 1 (best) BASIC12.53□□□□□ -0.46e-12■■□□□ 13.4
UPF1Q92900 ACTN1-201ENST00000193403 3779 ntAPPRIS P3 TSL 1 (best) BASIC11.5□□□□□ -0.576e-12■■□□□ 13.4
UPF1Q92900 ACTN1-216ENST00000556083 4674 ntTSL 1 (best)10.7□□□□□ -0.76e-12■■□□□ 13.4
UPF1Q92900 ACTN1-203ENST00000394419 3464 ntAPPRIS ALT1 TSL 1 (best) BASIC10.37□□□□□ -0.756e-12■■□□□ 13.4
UPF1Q92900 HM13-213ENST00000469126 756 ntTSL 521.91■■□□□ 1.13e-7■■□□□ 13.4
UPF1Q92900 HM13-203ENST00000344042 847 ntTSL 519.97■□□□□ 0.793e-7■■□□□ 13.4
UPF1Q92900 HM13-205ENST00000460225 443 ntTSL 519.65■□□□□ 0.743e-7■■□□□ 13.4
UPF1Q92900 HM13-223ENST00000496438 699 ntTSL 516.34■□□□□ 0.213e-7■■□□□ 13.4
UPF1Q92900 HM13-224ENST00000498035 3932 ntTSL 2 BASIC9.34□□□□□ -0.913e-7■■□□□ 13.4
UPF1Q92900 CD46-215ENST00000488596 872 ntTSL 39.29□□□□□ -0.927e-13■■□□□ 13.4
UPF1Q92900 CDV3-209ENST00000515421 1305 ntTSL 3 BASIC11.91□□□□□ -0.52e-13■■□□□ 13.4
UPF1Q92900 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC24.97■■□□□ 1.597e-6■■□□□ 13.4
UPF1Q92900 AC073869.1-202ENST00000438378 3785 ntTSL 1 (best) BASIC11.45□□□□□ -0.583e-8■■□□□ 13.4
UPF1Q92900 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC19.88■□□□□ 0.776e-7■■□□□ 13.4
UPF1Q92900 DNM1L-207ENST00000452533 4439 ntTSL 1 (best) BASIC8.92□□□□□ -0.981e-10■■□□□ 13.4
UPF1Q92900 DNM1L-205ENST00000414834 4211 ntTSL 2 BASIC8.44□□□□□ -1.061e-10■■□□□ 13.4
UPF1Q92900 DNM1L-203ENST00000381000 4397 ntTSL 1 (best) BASIC7.61□□□□□ -1.191e-10■■□□□ 13.4
UPF1Q92900 CENPN-207ENST00000564669 730 ntTSL 330.79■■■□□ 2.526e-8■■□□□ 13.4
Retrieved 100 of 15,879 protein–RNA pairs in 106.1 ms