Protein–RNA interactions for Protein: Q92541

RTF1, RNA polymerase-associated protein RTF1 homolog, humanhuman

Known RBP Predictions only

Length 710 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1Q92541 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
RTF1Q92541 CD151-203ENST00000397421 1486 ntAPPRIS P2 TSL 1 (best) BASIC23.35■■□□□ 1.33
RTF1Q92541 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC23.35■■□□□ 1.33
RTF1Q92541 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC23.35■■□□□ 1.33
RTF1Q92541 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC23.35■■□□□ 1.33
RTF1Q92541 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
RTF1Q92541 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC23.34■■□□□ 1.33
RTF1Q92541 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC23.34■■□□□ 1.33
RTF1Q92541 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
RTF1Q92541 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC23.34■■□□□ 1.33
RTF1Q92541 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC23.34■■□□□ 1.33
RTF1Q92541 LGALS1-201ENST00000215909 560 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
RTF1Q92541 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC23.34■■□□□ 1.33
RTF1Q92541 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
RTF1Q92541 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
RTF1Q92541 CD9-202ENST00000382515 1229 ntTSL 5 BASIC23.34■■□□□ 1.33
RTF1Q92541 CTNS-203ENST00000399306 803 ntTSL 3 BASIC23.34■■□□□ 1.33
RTF1Q92541 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC23.34■■□□□ 1.33
RTF1Q92541 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC23.34■■□□□ 1.33
RTF1Q92541 MOK-208ENST00000519058 917 ntTSL 2 BASIC23.34■■□□□ 1.33
RTF1Q92541 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
RTF1Q92541 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC23.34■■□□□ 1.33
RTF1Q92541 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC23.34■■□□□ 1.33
RTF1Q92541 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC23.34■■□□□ 1.33
RTF1Q92541 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
RTF1Q92541 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC23.34■■□□□ 1.33
RTF1Q92541 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
RTF1Q92541 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
RTF1Q92541 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC23.33■■□□□ 1.33
RTF1Q92541 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
RTF1Q92541 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC23.33■■□□□ 1.33
RTF1Q92541 AP005117.1-201ENST00000584346 1413 ntBASIC23.33■■□□□ 1.33
RTF1Q92541 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
RTF1Q92541 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
RTF1Q92541 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC23.33■■□□□ 1.33
RTF1Q92541 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
RTF1Q92541 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC23.33■■□□□ 1.33
RTF1Q92541 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
RTF1Q92541 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
RTF1Q92541 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
RTF1Q92541 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC23.33■■□□□ 1.33
RTF1Q92541 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC23.33■■□□□ 1.33
RTF1Q92541 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC23.33■■□□□ 1.33
RTF1Q92541 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC23.33■■□□□ 1.33
RTF1Q92541 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC23.33■■□□□ 1.33
RTF1Q92541 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC23.33■■□□□ 1.33
RTF1Q92541 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC23.33■■□□□ 1.32
RTF1Q92541 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.32
RTF1Q92541 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC23.33■■□□□ 1.32
RTF1Q92541 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC23.33■■□□□ 1.32
RTF1Q92541 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC23.33■■□□□ 1.32
RTF1Q92541 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC23.33■■□□□ 1.32
RTF1Q92541 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC23.32■■□□□ 1.32
RTF1Q92541 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
RTF1Q92541 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
RTF1Q92541 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC23.32■■□□□ 1.32
RTF1Q92541 PAN3-AS1-201ENST00000563843 1351 ntBASIC23.32■■□□□ 1.32
RTF1Q92541 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
RTF1Q92541 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
RTF1Q92541 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
RTF1Q92541 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
RTF1Q92541 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
RTF1Q92541 FGFR3P6-201ENST00000457012 610 ntBASIC23.32■■□□□ 1.32
RTF1Q92541 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC23.32■■□□□ 1.32
RTF1Q92541 AC079776.4-201ENST00000511039 504 ntBASIC23.32■■□□□ 1.32
RTF1Q92541 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC23.32■■□□□ 1.32
RTF1Q92541 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC23.32■■□□□ 1.32
RTF1Q92541 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC23.32■■□□□ 1.32
RTF1Q92541 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC23.32■■□□□ 1.32
RTF1Q92541 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC23.32■■□□□ 1.32
RTF1Q92541 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
RTF1Q92541 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC23.32■■□□□ 1.32
RTF1Q92541 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
RTF1Q92541 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC23.32■■□□□ 1.32
RTF1Q92541 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC23.32■■□□□ 1.32
RTF1Q92541 REXO1L9P-201ENST00000604264 2108 ntBASIC23.32■■□□□ 1.32
RTF1Q92541 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC23.31■■□□□ 1.32
RTF1Q92541 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
RTF1Q92541 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC23.31■■□□□ 1.32
RTF1Q92541 AC010460.3-201ENST00000511359 1579 ntBASIC23.31■■□□□ 1.32
RTF1Q92541 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC23.31■■□□□ 1.32
RTF1Q92541 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC23.31■■□□□ 1.32
RTF1Q92541 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
RTF1Q92541 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC23.31■■□□□ 1.32
RTF1Q92541 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
RTF1Q92541 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC23.31■■□□□ 1.32
RTF1Q92541 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
RTF1Q92541 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC23.31■■□□□ 1.32
RTF1Q92541 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC23.31■■□□□ 1.32
RTF1Q92541 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC23.31■■□□□ 1.32
RTF1Q92541 HIST2H3DP1-201ENST00000401004 416 ntBASIC23.31■■□□□ 1.32
RTF1Q92541 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC23.31■■□□□ 1.32
RTF1Q92541 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC23.31■■□□□ 1.32
RTF1Q92541 AF186996.4-201ENST00000467186 377 ntBASIC23.31■■□□□ 1.32
RTF1Q92541 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
RTF1Q92541 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC23.31■■□□□ 1.32
RTF1Q92541 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC23.31■■□□□ 1.32
RTF1Q92541 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
RTF1Q92541 HLA-A-201ENST00000376802 1334 ntBASIC23.31■■□□□ 1.32
RTF1Q92541 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
Retrieved 100 of 98,524 protein–RNA pairs in 31.7 ms