Protein–RNA interactions for Protein: Q7Z3V4

UBE3B, Ubiquitin-protein ligase E3B, humanhuman

Predictions only

Length 1,068 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3BQ7Z3V4 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC22.31■■□□□ 1.16
UBE3BQ7Z3V4 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC22.31■■□□□ 1.16
UBE3BQ7Z3V4 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC22.31■■□□□ 1.16
UBE3BQ7Z3V4 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC22.31■■□□□ 1.16
UBE3BQ7Z3V4 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC22.31■■□□□ 1.16
UBE3BQ7Z3V4 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC22.31■■□□□ 1.16
UBE3BQ7Z3V4 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC22.31■■□□□ 1.16
UBE3BQ7Z3V4 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC22.31■■□□□ 1.16
UBE3BQ7Z3V4 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
UBE3BQ7Z3V4 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC22.31■■□□□ 1.16
UBE3BQ7Z3V4 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC22.31■■□□□ 1.16
UBE3BQ7Z3V4 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
UBE3BQ7Z3V4 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
UBE3BQ7Z3V4 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
UBE3BQ7Z3V4 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
UBE3BQ7Z3V4 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
UBE3BQ7Z3V4 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC22.3■■□□□ 1.16
UBE3BQ7Z3V4 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC22.3■■□□□ 1.16
UBE3BQ7Z3V4 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
UBE3BQ7Z3V4 HIST2H3DP1-201ENST00000401004 416 ntBASIC22.3■■□□□ 1.16
UBE3BQ7Z3V4 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC22.3■■□□□ 1.16
UBE3BQ7Z3V4 C1orf109-203ENST00000464085 919 ntAPPRIS P1 TSL 2 BASIC22.3■■□□□ 1.16
UBE3BQ7Z3V4 AF186996.4-201ENST00000467186 377 ntBASIC22.3■■□□□ 1.16
UBE3BQ7Z3V4 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC22.3■■□□□ 1.16
UBE3BQ7Z3V4 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC22.3■■□□□ 1.16
UBE3BQ7Z3V4 SART3-203ENST00000546611 1184 ntBASIC22.3■■□□□ 1.16
UBE3BQ7Z3V4 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
UBE3BQ7Z3V4 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC22.3■■□□□ 1.16
UBE3BQ7Z3V4 AC084125.4-201ENST00000580385 338 ntTSL 3 BASIC22.3■■□□□ 1.16
UBE3BQ7Z3V4 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC22.3■■□□□ 1.16
UBE3BQ7Z3V4 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC22.3■■□□□ 1.16
UBE3BQ7Z3V4 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC22.3■■□□□ 1.16
UBE3BQ7Z3V4 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
UBE3BQ7Z3V4 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC22.3■■□□□ 1.16
UBE3BQ7Z3V4 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC22.3■■□□□ 1.16
UBE3BQ7Z3V4 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
UBE3BQ7Z3V4 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
UBE3BQ7Z3V4 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC22.3■■□□□ 1.16
UBE3BQ7Z3V4 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
UBE3BQ7Z3V4 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
UBE3BQ7Z3V4 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC22.3■■□□□ 1.16
UBE3BQ7Z3V4 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC22.3■■□□□ 1.16
UBE3BQ7Z3V4 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
UBE3BQ7Z3V4 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC22.29■■□□□ 1.16
UBE3BQ7Z3V4 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC22.29■■□□□ 1.16
UBE3BQ7Z3V4 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC22.29■■□□□ 1.16
UBE3BQ7Z3V4 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
UBE3BQ7Z3V4 AL031284.1-201ENST00000419297 478 ntBASIC22.29■■□□□ 1.16
UBE3BQ7Z3V4 RNPS1P1-201ENST00000507437 918 ntBASIC22.29■■□□□ 1.16
UBE3BQ7Z3V4 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
UBE3BQ7Z3V4 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC22.29■■□□□ 1.16
UBE3BQ7Z3V4 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC22.29■■□□□ 1.16
UBE3BQ7Z3V4 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC22.29■■□□□ 1.16
UBE3BQ7Z3V4 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC22.29■■□□□ 1.16
UBE3BQ7Z3V4 AP001005.1-201ENST00000571755 1248 ntBASIC22.29■■□□□ 1.16
UBE3BQ7Z3V4 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC22.29■■□□□ 1.16
UBE3BQ7Z3V4 AC064862.7-201ENST00000604520 867 ntBASIC22.29■■□□□ 1.16
UBE3BQ7Z3V4 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC22.29■■□□□ 1.16
UBE3BQ7Z3V4 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC22.29■■□□□ 1.16
UBE3BQ7Z3V4 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC22.29■■□□□ 1.16
UBE3BQ7Z3V4 RSRC1-211ENST00000480820 1410 ntAPPRIS P1 TSL 5 BASIC22.29■■□□□ 1.16
UBE3BQ7Z3V4 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
UBE3BQ7Z3V4 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC22.29■■□□□ 1.16
UBE3BQ7Z3V4 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC22.29■■□□□ 1.16
UBE3BQ7Z3V4 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
UBE3BQ7Z3V4 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC22.29■■□□□ 1.16
UBE3BQ7Z3V4 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC22.29■■□□□ 1.16
UBE3BQ7Z3V4 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC22.29■■□□□ 1.16
UBE3BQ7Z3V4 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC22.28■■□□□ 1.16
UBE3BQ7Z3V4 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
UBE3BQ7Z3V4 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
UBE3BQ7Z3V4 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC22.28■■□□□ 1.16
UBE3BQ7Z3V4 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
UBE3BQ7Z3V4 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC22.28■■□□□ 1.16
UBE3BQ7Z3V4 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC22.28■■□□□ 1.16
UBE3BQ7Z3V4 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC22.28■■□□□ 1.16
UBE3BQ7Z3V4 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC22.28■■□□□ 1.16
UBE3BQ7Z3V4 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC22.28■■□□□ 1.16
UBE3BQ7Z3V4 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC22.28■■□□□ 1.16
UBE3BQ7Z3V4 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC22.28■■□□□ 1.16
UBE3BQ7Z3V4 HNRNPDP1-201ENST00000439535 754 ntBASIC22.28■■□□□ 1.16
UBE3BQ7Z3V4 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC22.28■■□□□ 1.16
UBE3BQ7Z3V4 ZBP1-208ENST00000541799 1041 ntAPPRIS ALT2 TSL 5 BASIC22.28■■□□□ 1.16
UBE3BQ7Z3V4 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC22.28■■□□□ 1.16
UBE3BQ7Z3V4 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC22.28■■□□□ 1.16
UBE3BQ7Z3V4 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC22.28■■□□□ 1.16
UBE3BQ7Z3V4 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
UBE3BQ7Z3V4 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC22.28■■□□□ 1.16
UBE3BQ7Z3V4 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC22.28■■□□□ 1.16
UBE3BQ7Z3V4 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC22.28■■□□□ 1.16
UBE3BQ7Z3V4 ADM-208ENST00000534464 1640 ntTSL 2 BASIC22.28■■□□□ 1.16
UBE3BQ7Z3V4 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC22.28■■□□□ 1.16
UBE3BQ7Z3V4 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
UBE3BQ7Z3V4 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
UBE3BQ7Z3V4 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC22.27■■□□□ 1.16
UBE3BQ7Z3V4 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
UBE3BQ7Z3V4 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC22.27■■□□□ 1.16
UBE3BQ7Z3V4 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC22.27■■□□□ 1.16
UBE3BQ7Z3V4 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
UBE3BQ7Z3V4 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
Retrieved 100 of 98,524 protein–RNA pairs in 44.9 ms