Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
USP54Q70EL1 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC23.72■■□□□ 1.39
USP54Q70EL1 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
USP54Q70EL1 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
USP54Q70EL1 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
USP54Q70EL1 GLIPR1L1-202ENST00000378695 885 ntAPPRIS ALT2 TSL 1 (best) BASIC23.71■■□□□ 1.39
USP54Q70EL1 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC23.71■■□□□ 1.39
USP54Q70EL1 AP002414.1-201ENST00000391405 1147 ntBASIC23.71■■□□□ 1.39
USP54Q70EL1 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC23.71■■□□□ 1.39
USP54Q70EL1 MKNK2P1-201ENST00000437526 628 ntBASIC23.71■■□□□ 1.39
USP54Q70EL1 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC23.71■■□□□ 1.39
USP54Q70EL1 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC23.71■■□□□ 1.39
USP54Q70EL1 STXBP2-222ENST00000612033 1188 ntTSL 5 BASIC23.71■■□□□ 1.39
USP54Q70EL1 PDCD6-214ENST00000628729 1073 ntTSL 5 BASIC23.71■■□□□ 1.39
USP54Q70EL1 AC092865.6-201ENST00000642101 219 ntBASIC23.71■■□□□ 1.39
USP54Q70EL1 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
USP54Q70EL1 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC23.71■■□□□ 1.39
USP54Q70EL1 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC23.71■■□□□ 1.39
USP54Q70EL1 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.39
USP54Q70EL1 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.39
USP54Q70EL1 GUK1-203ENST00000366718 1275 ntAPPRIS P3 TSL 3 BASIC23.7■■□□□ 1.39
USP54Q70EL1 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC23.7■■□□□ 1.39
USP54Q70EL1 HSD17B8-203ENST00000374662 990 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.39
USP54Q70EL1 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC23.7■■□□□ 1.39
USP54Q70EL1 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC23.7■■□□□ 1.39
USP54Q70EL1 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC23.7■■□□□ 1.39
USP54Q70EL1 NKTR-203ENST00000442970 646 ntTSL 2 BASIC23.7■■□□□ 1.39
USP54Q70EL1 MOGAT1-201ENST00000446656 1048 ntAPPRIS P1 TSL 5 BASIC23.7■■□□□ 1.39
USP54Q70EL1 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC23.7■■□□□ 1.39
USP54Q70EL1 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC23.7■■□□□ 1.39
USP54Q70EL1 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC23.7■■□□□ 1.39
USP54Q70EL1 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC23.7■■□□□ 1.39
USP54Q70EL1 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC23.7■■□□□ 1.39
USP54Q70EL1 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC23.7■■□□□ 1.38
USP54Q70EL1 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
USP54Q70EL1 AC254562.1-201ENST00000417586 456 ntBASIC23.7■■□□□ 1.38
USP54Q70EL1 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC23.7■■□□□ 1.38
USP54Q70EL1 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
USP54Q70EL1 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC23.7■■□□□ 1.38
USP54Q70EL1 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
USP54Q70EL1 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC23.69■■□□□ 1.38
USP54Q70EL1 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
USP54Q70EL1 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC23.69■■□□□ 1.38
USP54Q70EL1 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC23.69■■□□□ 1.38
USP54Q70EL1 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC23.69■■□□□ 1.38
USP54Q70EL1 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC23.69■■□□□ 1.38
USP54Q70EL1 FIGLA-201ENST00000332372 722 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
USP54Q70EL1 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC23.69■■□□□ 1.38
USP54Q70EL1 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC23.69■■□□□ 1.38
USP54Q70EL1 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC23.69■■□□□ 1.38
USP54Q70EL1 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
USP54Q70EL1 SEC11C-205ENST00000588875 718 ntTSL 2 BASIC23.69■■□□□ 1.38
USP54Q70EL1 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
USP54Q70EL1 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC23.69■■□□□ 1.38
USP54Q70EL1 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC23.69■■□□□ 1.38
USP54Q70EL1 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
USP54Q70EL1 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC23.69■■□□□ 1.38
USP54Q70EL1 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
USP54Q70EL1 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
USP54Q70EL1 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
USP54Q70EL1 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC23.68■■□□□ 1.38
USP54Q70EL1 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
USP54Q70EL1 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC23.68■■□□□ 1.38
USP54Q70EL1 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC23.68■■□□□ 1.38
USP54Q70EL1 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC23.68■■□□□ 1.38
USP54Q70EL1 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
USP54Q70EL1 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC23.68■■□□□ 1.38
USP54Q70EL1 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC23.68■■□□□ 1.38
USP54Q70EL1 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC23.68■■□□□ 1.38
USP54Q70EL1 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC23.68■■□□□ 1.38
USP54Q70EL1 SLC4A1APP2-201ENST00000424054 1259 ntBASIC23.68■■□□□ 1.38
USP54Q70EL1 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC23.68■■□□□ 1.38
USP54Q70EL1 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC23.68■■□□□ 1.38
USP54Q70EL1 SIGLEC30P-201ENST00000455569 941 ntBASIC23.68■■□□□ 1.38
USP54Q70EL1 PUS1-205ENST00000535067 838 ntTSL 3 BASIC23.68■■□□□ 1.38
USP54Q70EL1 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC23.68■■□□□ 1.38
USP54Q70EL1 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC23.68■■□□□ 1.38
USP54Q70EL1 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC23.68■■□□□ 1.38
USP54Q70EL1 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
USP54Q70EL1 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC23.67■■□□□ 1.38
USP54Q70EL1 C19orf70-201ENST00000309324 896 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
USP54Q70EL1 ADARB2-201ENST00000381305 703 ntTSL 2 BASIC23.67■■□□□ 1.38
USP54Q70EL1 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
USP54Q70EL1 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC23.67■■□□□ 1.38
USP54Q70EL1 PRSS29P-201ENST00000440800 595 ntBASIC23.67■■□□□ 1.38
USP54Q70EL1 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC23.67■■□□□ 1.38
USP54Q70EL1 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC23.67■■□□□ 1.38
USP54Q70EL1 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
USP54Q70EL1 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC23.67■■□□□ 1.38
USP54Q70EL1 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
USP54Q70EL1 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
USP54Q70EL1 HAUS8-201ENST00000253669 1568 ntAPPRIS P3 TSL 1 (best) BASIC23.67■■□□□ 1.38
USP54Q70EL1 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC23.67■■□□□ 1.38
USP54Q70EL1 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC23.67■■□□□ 1.38
USP54Q70EL1 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC23.67■■□□□ 1.38
USP54Q70EL1 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
USP54Q70EL1 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC23.67■■□□□ 1.38
USP54Q70EL1 PDE6D-202ENST00000409772 672 ntTSL 3 BASIC23.67■■□□□ 1.38
USP54Q70EL1 AC211486.1-202ENST00000416371 468 ntBASIC23.67■■□□□ 1.38
USP54Q70EL1 RHOQP3-201ENST00000437982 621 ntBASIC23.67■■□□□ 1.38
Retrieved 100 of 98,524 protein–RNA pairs in 36.9 ms