Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
COL28A1Q2UY09 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC17.24■□□□□ 0.35
COL28A1Q2UY09 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC17.24■□□□□ 0.35
COL28A1Q2UY09 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
COL28A1Q2UY09 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
COL28A1Q2UY09 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC17.24■□□□□ 0.35
COL28A1Q2UY09 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
COL28A1Q2UY09 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
COL28A1Q2UY09 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
COL28A1Q2UY09 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
COL28A1Q2UY09 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
COL28A1Q2UY09 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
COL28A1Q2UY09 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
COL28A1Q2UY09 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
COL28A1Q2UY09 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
COL28A1Q2UY09 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC17.23■□□□□ 0.35
COL28A1Q2UY09 AC025183.1-201ENST00000506335 425 ntTSL 4 BASIC17.23■□□□□ 0.35
COL28A1Q2UY09 RNA5SP416-201ENST00000516838 111 ntBASIC17.23■□□□□ 0.35
COL28A1Q2UY09 AC002347.1-201ENST00000569543 541 ntBASIC17.23■□□□□ 0.35
COL28A1Q2UY09 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
COL28A1Q2UY09 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
COL28A1Q2UY09 CCL3-204ENST00000613922 778 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
COL28A1Q2UY09 AC244153.1-202ENST00000617855 482 ntTSL 3 BASIC17.23■□□□□ 0.35
COL28A1Q2UY09 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
COL28A1Q2UY09 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
COL28A1Q2UY09 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
COL28A1Q2UY09 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
COL28A1Q2UY09 PAN3-AS1-201ENST00000563843 1351 ntBASIC17.23■□□□□ 0.35
COL28A1Q2UY09 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
COL28A1Q2UY09 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
COL28A1Q2UY09 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC17.23■□□□□ 0.35
COL28A1Q2UY09 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
COL28A1Q2UY09 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
COL28A1Q2UY09 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
COL28A1Q2UY09 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC17.23■□□□□ 0.35
COL28A1Q2UY09 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
COL28A1Q2UY09 SYDE2-202ENST00000341460 5512 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
COL28A1Q2UY09 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
COL28A1Q2UY09 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC17.22■□□□□ 0.35
COL28A1Q2UY09 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC17.22■□□□□ 0.35
COL28A1Q2UY09 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC17.22■□□□□ 0.35
COL28A1Q2UY09 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC17.22■□□□□ 0.35
COL28A1Q2UY09 UBXN1-201ENST00000294119 1291 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
COL28A1Q2UY09 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
COL28A1Q2UY09 JMJD7-203ENST00000408047 1192 ntTSL 5 BASIC17.22■□□□□ 0.35
COL28A1Q2UY09 RNA5SP415-201ENST00000517246 115 ntBASIC17.22■□□□□ 0.35
COL28A1Q2UY09 ENDOV-205ENST00000518644 625 ntTSL 4 BASIC17.22■□□□□ 0.35
COL28A1Q2UY09 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC17.22■□□□□ 0.35
COL28A1Q2UY09 FLJ20021-201ENST00000527564 790 ntTSL 2 BASIC17.22■□□□□ 0.35
COL28A1Q2UY09 CEMP1-201ENST00000565480 519 ntAPPRIS ALT2 TSL 3 BASIC17.22■□□□□ 0.35
COL28A1Q2UY09 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
COL28A1Q2UY09 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC17.22■□□□□ 0.35
COL28A1Q2UY09 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
COL28A1Q2UY09 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
COL28A1Q2UY09 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
COL28A1Q2UY09 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC17.22■□□□□ 0.35
COL28A1Q2UY09 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC17.22■□□□□ 0.35
COL28A1Q2UY09 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC17.22■□□□□ 0.35
COL28A1Q2UY09 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
COL28A1Q2UY09 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
COL28A1Q2UY09 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC17.22■□□□□ 0.35
COL28A1Q2UY09 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
COL28A1Q2UY09 FNBP1-202ENST00000420781 5410 ntAPPRIS ALT1 TSL 1 (best) BASIC17.22■□□□□ 0.35
COL28A1Q2UY09 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
COL28A1Q2UY09 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
COL28A1Q2UY09 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
COL28A1Q2UY09 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
COL28A1Q2UY09 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
COL28A1Q2UY09 AC006333.2-201ENST00000607957 2099 ntBASIC17.21■□□□□ 0.35
COL28A1Q2UY09 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
COL28A1Q2UY09 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC17.21■□□□□ 0.35
COL28A1Q2UY09 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
COL28A1Q2UY09 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.35
COL28A1Q2UY09 C19orf70-201ENST00000309324 896 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
COL28A1Q2UY09 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
COL28A1Q2UY09 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC17.21■□□□□ 0.35
COL28A1Q2UY09 MIR770-201ENST00000390219 98 ntBASIC17.21■□□□□ 0.35
COL28A1Q2UY09 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC17.21■□□□□ 0.35
COL28A1Q2UY09 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC17.21■□□□□ 0.35
COL28A1Q2UY09 SNHG9-202ENST00000564014 471 ntBASIC17.21■□□□□ 0.35
COL28A1Q2UY09 PTPRS-208ENST00000590509 893 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
COL28A1Q2UY09 AP001269.4-201ENST00000609611 512 ntBASIC17.21■□□□□ 0.35
COL28A1Q2UY09 ORC5-208ENST00000626700 344 ntTSL 3 BASIC17.21■□□□□ 0.35
COL28A1Q2UY09 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC17.21■□□□□ 0.35
COL28A1Q2UY09 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC17.21■□□□□ 0.35
COL28A1Q2UY09 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC17.21■□□□□ 0.35
COL28A1Q2UY09 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
COL28A1Q2UY09 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
COL28A1Q2UY09 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC17.21■□□□□ 0.35
COL28A1Q2UY09 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
COL28A1Q2UY09 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
COL28A1Q2UY09 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
COL28A1Q2UY09 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
COL28A1Q2UY09 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.34
COL28A1Q2UY09 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC17.21■□□□□ 0.34
COL28A1Q2UY09 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC17.21■□□□□ 0.34
COL28A1Q2UY09 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
COL28A1Q2UY09 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
COL28A1Q2UY09 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC17.2■□□□□ 0.34
COL28A1Q2UY09 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 22.7 ms