Protein–RNA interactions for Protein: Q02388

COL7A1, Collagen alpha-1(VII) chain, humanhuman

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1Q02388 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
COL7A1Q02388 KLF4P1-201ENST00000412782 1185 ntBASIC12.75□□□□□ -0.37
COL7A1Q02388 MRPS18AP1-201ENST00000414458 589 ntBASIC12.75□□□□□ -0.37
COL7A1Q02388 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC12.75□□□□□ -0.37
COL7A1Q02388 CRB3P1-201ENST00000449338 276 ntBASIC12.75□□□□□ -0.37
COL7A1Q02388 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC12.75□□□□□ -0.37
COL7A1Q02388 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC12.75□□□□□ -0.37
COL7A1Q02388 AL049757.1-201ENST00000616842 1596 ntBASIC12.75□□□□□ -0.37
COL7A1Q02388 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC12.75□□□□□ -0.37
COL7A1Q02388 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC12.74□□□□□ -0.37
COL7A1Q02388 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC12.74□□□□□ -0.37
COL7A1Q02388 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC12.74□□□□□ -0.37
COL7A1Q02388 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
COL7A1Q02388 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
COL7A1Q02388 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC12.74□□□□□ -0.37
COL7A1Q02388 AC004846.2-201ENST00000556578 777 ntTSL 3 BASIC12.74□□□□□ -0.37
COL7A1Q02388 SERF2-217ENST00000630046 862 ntTSL 5 BASIC12.74□□□□□ -0.37
COL7A1Q02388 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
COL7A1Q02388 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
COL7A1Q02388 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC12.74□□□□□ -0.37
COL7A1Q02388 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC12.74□□□□□ -0.37
COL7A1Q02388 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
COL7A1Q02388 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC12.74□□□□□ -0.37
COL7A1Q02388 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC12.74□□□□□ -0.37
COL7A1Q02388 LST1-202ENST00000303757 604 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
COL7A1Q02388 AL627223.1-201ENST00000416693 442 ntBASIC12.74□□□□□ -0.37
COL7A1Q02388 CD63-210ENST00000550776 870 ntTSL 5 BASIC12.74□□□□□ -0.37
COL7A1Q02388 TVP23B-206ENST00000574226 1080 ntAPPRIS ALT1 TSL 1 (best) BASIC12.74□□□□□ -0.37
COL7A1Q02388 FSTL3-202ENST00000588773 746 ntTSL 2 BASIC12.74□□□□□ -0.37
COL7A1Q02388 TK1-204ENST00000590430 683 ntTSL 3 BASIC12.74□□□□□ -0.37
COL7A1Q02388 AC005759.1-201ENST00000594805 855 ntTSL 3 BASIC12.74□□□□□ -0.37
COL7A1Q02388 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
COL7A1Q02388 HFE2-206ENST00000634927 506 ntTSL 4 BASIC12.74□□□□□ -0.37
COL7A1Q02388 ANXA8-203ENST00000583874 1860 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
COL7A1Q02388 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
COL7A1Q02388 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC12.74□□□□□ -0.37
COL7A1Q02388 PRR22-202ENST00000419421 1392 ntAPPRIS P1 TSL 2 BASIC12.74□□□□□ -0.37
COL7A1Q02388 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC12.74□□□□□ -0.37
COL7A1Q02388 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
COL7A1Q02388 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC12.74□□□□□ -0.37
COL7A1Q02388 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC12.73□□□□□ -0.37
COL7A1Q02388 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC12.73□□□□□ -0.37
COL7A1Q02388 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
COL7A1Q02388 GABARAPL1-202ENST00000421801 855 ntTSL 2 BASIC12.73□□□□□ -0.37
COL7A1Q02388 FAM72B-205ENST00000471903 676 ntTSL 5 BASIC12.73□□□□□ -0.37
COL7A1Q02388 NUBP2-208ENST00000565987 1049 ntTSL 5 BASIC12.73□□□□□ -0.37
COL7A1Q02388 OAZ1-202ENST00000582888 969 ntAPPRIS ALT1 TSL 5 BASIC12.73□□□□□ -0.37
COL7A1Q02388 AC099522.2-201ENST00000607001 744 ntBASIC12.73□□□□□ -0.37
COL7A1Q02388 AC009093.7-201ENST00000623853 1223 ntBASIC12.73□□□□□ -0.37
COL7A1Q02388 CREB3L3-204ENST00000602147 1382 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
COL7A1Q02388 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC12.73□□□□□ -0.37
COL7A1Q02388 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC12.73□□□□□ -0.37
COL7A1Q02388 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
COL7A1Q02388 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC12.73□□□□□ -0.37
COL7A1Q02388 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
COL7A1Q02388 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC12.73□□□□□ -0.37
COL7A1Q02388 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
COL7A1Q02388 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
COL7A1Q02388 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC12.73□□□□□ -0.37
COL7A1Q02388 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC12.73□□□□□ -0.37
COL7A1Q02388 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
COL7A1Q02388 AL022341.1-201ENST00000455294 389 ntTSL 2 BASIC12.73□□□□□ -0.37
COL7A1Q02388 RAB3A-202ENST00000464076 1253 ntTSL 2 BASIC12.73□□□□□ -0.37
COL7A1Q02388 DAD1-205ENST00000543337 501 ntTSL 3 BASIC12.73□□□□□ -0.37
COL7A1Q02388 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC12.73□□□□□ -0.37
COL7A1Q02388 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC12.73□□□□□ -0.37
COL7A1Q02388 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
COL7A1Q02388 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
COL7A1Q02388 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC12.73□□□□□ -0.37
COL7A1Q02388 BSCL2-210ENST00000421906 1440 ntAPPRIS P3 TSL 5 BASIC12.73□□□□□ -0.37
COL7A1Q02388 BCAR1-209ENST00000546196 1340 ntBASIC12.73□□□□□ -0.37
COL7A1Q02388 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
COL7A1Q02388 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC12.73□□□□□ -0.37
COL7A1Q02388 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC12.72□□□□□ -0.37
COL7A1Q02388 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
COL7A1Q02388 PQLC2L-201ENST00000312275 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC12.72□□□□□ -0.37
COL7A1Q02388 SNHG11-201ENST00000359074 1031 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
COL7A1Q02388 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
COL7A1Q02388 AC106795.3-201ENST00000511650 547 ntTSL 4 BASIC12.72□□□□□ -0.37
COL7A1Q02388 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC12.72□□□□□ -0.37
COL7A1Q02388 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC12.72□□□□□ -0.37
COL7A1Q02388 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
COL7A1Q02388 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
COL7A1Q02388 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
COL7A1Q02388 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC12.72□□□□□ -0.37
COL7A1Q02388 AL121761.2-201ENST00000598007 1648 ntBASIC12.72□□□□□ -0.37
COL7A1Q02388 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
COL7A1Q02388 AC025580.3-201ENST00000617932 1424 ntBASIC12.72□□□□□ -0.37
COL7A1Q02388 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC12.72□□□□□ -0.37
COL7A1Q02388 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC12.72□□□□□ -0.37
COL7A1Q02388 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
COL7A1Q02388 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC12.72□□□□□ -0.37
COL7A1Q02388 THOC7-201ENST00000295899 990 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
COL7A1Q02388 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
COL7A1Q02388 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
COL7A1Q02388 FAM58CP-201ENST00000435741 640 ntBASIC12.72□□□□□ -0.37
COL7A1Q02388 FAM207CP-201ENST00000443486 507 ntBASIC12.72□□□□□ -0.37
COL7A1Q02388 SLC25A30-AS1-201ENST00000506633 701 ntTSL 3 BASIC12.72□□□□□ -0.37
COL7A1Q02388 VASH2-211ENST00000517399 1068 ntAPPRIS ALT1 TSL 1 (best) BASIC12.72□□□□□ -0.37
COL7A1Q02388 AC092070.4-201ENST00000599803 507 ntTSL 5 BASIC12.72□□□□□ -0.37
Retrieved 100 of 98,524 protein–RNA pairs in 56.5 ms