Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC17.16■□□□□ 0.34
MSX2P35548 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
MSX2P35548 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC17.16■□□□□ 0.34
MSX2P35548 AC105020.1-201ENST00000435356 2205 ntBASIC17.16■□□□□ 0.34
MSX2P35548 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC17.16■□□□□ 0.34
MSX2P35548 GHR-201ENST00000230882 4560 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
MSX2P35548 ATP6V0E2-AS1-201ENST00000461019 2973 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
MSX2P35548 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC17.16■□□□□ 0.34
MSX2P35548 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC17.16■□□□□ 0.34
MSX2P35548 CHST8-201ENST00000262622 2479 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
MSX2P35548 ASL-201ENST00000304874 2143 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
MSX2P35548 ABHD18-203ENST00000444616 2129 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
MSX2P35548 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
MSX2P35548 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
MSX2P35548 CROCCP1-201ENST00000426910 5675 ntBASIC17.15■□□□□ 0.34
MSX2P35548 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
MSX2P35548 TSPAN3-201ENST00000267970 6467 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
MSX2P35548 MIB2-217ENST00000504599 3311 ntAPPRIS ALT2 TSL 2 BASIC17.15■□□□□ 0.34
MSX2P35548 SEPHS2-201ENST00000478753 2551 ntAPPRIS P1 BASIC17.15■□□□□ 0.34
MSX2P35548 GDF6-201ENST00000287020 3701 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
MSX2P35548 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
MSX2P35548 SYBU-230ENST00000532779 2765 ntAPPRIS ALT2 TSL 2 BASIC17.15■□□□□ 0.34
MSX2P35548 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
MSX2P35548 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
MSX2P35548 SLC35G1-202ENST00000427197 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
MSX2P35548 AFG3L2-201ENST00000269143 3247 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
MSX2P35548 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
MSX2P35548 SLC9A7-201ENST00000328306 3838 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
MSX2P35548 DGKZ-202ENST00000343674 3816 ntAPPRIS P3 TSL 2 BASIC17.15■□□□□ 0.34
MSX2P35548 KRT17P3-201ENST00000420566 1262 ntBASIC17.15■□□□□ 0.34
MSX2P35548 MCCD1P1-208ENST00000445732 328 ntBASIC17.15■□□□□ 0.34
MSX2P35548 LY6E-205ENST00000519611 635 ntTSL 3 BASIC17.15■□□□□ 0.34
MSX2P35548 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC17.15■□□□□ 0.34
MSX2P35548 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
MSX2P35548 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC17.15■□□□□ 0.34
MSX2P35548 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
MSX2P35548 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
MSX2P35548 AC133963.1-201ENST00000504166 1679 ntBASIC17.15■□□□□ 0.34
MSX2P35548 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
MSX2P35548 UNC119-204ENST00000470125 2050 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
MSX2P35548 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
MSX2P35548 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
MSX2P35548 PTK7-202ENST00000230419 4272 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
MSX2P35548 BAIAP2-205ENST00000435091 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
MSX2P35548 FAM76B-201ENST00000358780 3952 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
MSX2P35548 HAGH-202ENST00000397356 2984 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
MSX2P35548 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
MSX2P35548 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC17.15■□□□□ 0.34
MSX2P35548 KLF10-202ENST00000395884 3659 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
MSX2P35548 RAI1-201ENST00000353383 7662 ntAPPRIS P2 TSL 1 (best) BASIC17.15■□□□□ 0.34
MSX2P35548 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC17.15■□□□□ 0.34
MSX2P35548 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC17.14■□□□□ 0.34
MSX2P35548 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC17.14■□□□□ 0.33
MSX2P35548 FAM111A-204ENST00000528737 6189 ntAPPRIS P1 TSL 2 BASIC17.14■□□□□ 0.33
MSX2P35548 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
MSX2P35548 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
MSX2P35548 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
MSX2P35548 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC17.14■□□□□ 0.33
MSX2P35548 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC17.14■□□□□ 0.33
MSX2P35548 F11R-202ENST00000368026 4835 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
MSX2P35548 LRP11-201ENST00000239367 3260 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
MSX2P35548 CMIP-201ENST00000398040 2825 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
MSX2P35548 FOXA1-201ENST00000250448 2862 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
MSX2P35548 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
MSX2P35548 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC17.14■□□□□ 0.33
MSX2P35548 AC130371.2-201ENST00000619443 611 ntBASIC17.14■□□□□ 0.33
MSX2P35548 KLHDC8A-205ENST00000539253 2931 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
MSX2P35548 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
MSX2P35548 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC17.14■□□□□ 0.33
MSX2P35548 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
MSX2P35548 ZNF503-201ENST00000372524 3347 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
MSX2P35548 VARS-215ENST00000375663 4312 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
MSX2P35548 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC17.14■□□□□ 0.33
MSX2P35548 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC17.14■□□□□ 0.33
MSX2P35548 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
MSX2P35548 ITGB4-201ENST00000200181 5919 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
MSX2P35548 CDC73-201ENST00000367435 4969 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
MSX2P35548 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
MSX2P35548 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC17.13■□□□□ 0.33
MSX2P35548 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC17.13■□□□□ 0.33
MSX2P35548 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
MSX2P35548 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
MSX2P35548 MAPK14-201ENST00000229794 3779 ntAPPRIS P5 TSL 1 (best) BASIC17.13■□□□□ 0.33
MSX2P35548 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
MSX2P35548 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
MSX2P35548 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
MSX2P35548 REPS2-201ENST00000303843 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
MSX2P35548 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
MSX2P35548 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
MSX2P35548 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
MSX2P35548 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
MSX2P35548 MIR149-201ENST00000384879 89 ntBASIC17.13■□□□□ 0.33
MSX2P35548 SERF2-207ENST00000409614 582 ntTSL 2 BASIC17.13■□□□□ 0.33
MSX2P35548 FAM207BP-201ENST00000447172 505 ntBASIC17.13■□□□□ 0.33
MSX2P35548 AC011506.1-201ENST00000474329 610 ntBASIC17.13■□□□□ 0.33
MSX2P35548 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC17.13■□□□□ 0.33
MSX2P35548 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC17.13■□□□□ 0.33
MSX2P35548 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
MSX2P35548 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC17.13■□□□□ 0.33
MSX2P35548 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC17.13■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 66.3 ms