Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 HR-201ENST00000312841 5351 ntTSL 5 BASIC18.04■□□□□ 0.48
PTPN4P29074 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC18.04■□□□□ 0.48
PTPN4P29074 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
PTPN4P29074 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC18.04■□□□□ 0.48
PTPN4P29074 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
PTPN4P29074 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
PTPN4P29074 HARS-201ENST00000307633 1780 ntTSL 2 BASIC18.04■□□□□ 0.48
PTPN4P29074 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
PTPN4P29074 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC18.04■□□□□ 0.48
PTPN4P29074 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
PTPN4P29074 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
PTPN4P29074 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
PTPN4P29074 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC18.04■□□□□ 0.48
PTPN4P29074 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
PTPN4P29074 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
PTPN4P29074 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
PTPN4P29074 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC18.03■□□□□ 0.48
PTPN4P29074 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC18.03■□□□□ 0.48
PTPN4P29074 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC18.03■□□□□ 0.48
PTPN4P29074 CROCC2-201ENST00000443866 5382 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
PTPN4P29074 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
PTPN4P29074 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC18.03■□□□□ 0.48
PTPN4P29074 CACNA1B-205ENST00000371363 9758 ntAPPRIS ALT2 TSL 5 BASIC18.03■□□□□ 0.48
PTPN4P29074 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
PTPN4P29074 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC18.03■□□□□ 0.48
PTPN4P29074 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC18.03■□□□□ 0.48
PTPN4P29074 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC18.03■□□□□ 0.48
PTPN4P29074 SAPCD2P2-201ENST00000431719 1174 ntBASIC18.03■□□□□ 0.48
PTPN4P29074 AC092647.4-201ENST00000457211 535 ntBASIC18.03■□□□□ 0.48
PTPN4P29074 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
PTPN4P29074 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC18.03■□□□□ 0.48
PTPN4P29074 SLCO5A1-206ENST00000530307 2630 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
PTPN4P29074 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC18.03■□□□□ 0.48
PTPN4P29074 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
PTPN4P29074 KCNB1-203ENST00000635465 4114 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
PTPN4P29074 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC18.03■□□□□ 0.48
PTPN4P29074 AC112777.1-201ENST00000540175 1423 ntBASIC18.03■□□□□ 0.48
PTPN4P29074 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC18.03■□□□□ 0.48
PTPN4P29074 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
PTPN4P29074 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
PTPN4P29074 DPP6-202ENST00000377770 3710 ntAPPRIS P4 TSL 1 (best) BASIC18.03■□□□□ 0.48
PTPN4P29074 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
PTPN4P29074 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC18.03■□□□□ 0.48
PTPN4P29074 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC18.03■□□□□ 0.48
PTPN4P29074 RAB43-201ENST00000315150 4467 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
PTPN4P29074 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
PTPN4P29074 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
PTPN4P29074 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC18.03■□□□□ 0.48
PTPN4P29074 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC18.03■□□□□ 0.48
PTPN4P29074 ZNF281-201ENST00000294740 4891 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
PTPN4P29074 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC18.03■□□□□ 0.48
PTPN4P29074 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC18.02■□□□□ 0.48
PTPN4P29074 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC18.02■□□□□ 0.48
PTPN4P29074 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC18.02■□□□□ 0.48
PTPN4P29074 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
PTPN4P29074 DAG1-222ENST00000545947 5829 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.48
PTPN4P29074 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
PTPN4P29074 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
PTPN4P29074 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
PTPN4P29074 PHRF1-205ENST00000533464 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.48
PTPN4P29074 ASPM-201ENST00000294732 6132 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
PTPN4P29074 KLK14-201ENST00000156499 1060 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
PTPN4P29074 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
PTPN4P29074 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
PTPN4P29074 CD14-201ENST00000302014 1886 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
PTPN4P29074 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
PTPN4P29074 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
PTPN4P29074 ISOC2-202ENST00000425675 998 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
PTPN4P29074 AC037459.1-202ENST00000430850 531 ntAPPRIS P1 TSL 4 BASIC18.02■□□□□ 0.48
PTPN4P29074 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC18.02■□□□□ 0.48
PTPN4P29074 MOK-234ENST00000524370 1165 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
PTPN4P29074 STAT5A-207ENST00000546010 3086 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
PTPN4P29074 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.48
PTPN4P29074 AP001094.4-201ENST00000579008 2176 ntBASIC18.02■□□□□ 0.48
PTPN4P29074 NBPF14-202ENST00000593495 1082 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
PTPN4P29074 TMEM114-203ENST00000620492 945 ntAPPRIS P1 TSL 2 BASIC18.02■□□□□ 0.48
PTPN4P29074 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.48
PTPN4P29074 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC18.02■□□□□ 0.48
PTPN4P29074 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC18.02■□□□□ 0.47
PTPN4P29074 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC18.02■□□□□ 0.47
PTPN4P29074 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC18.02■□□□□ 0.47
PTPN4P29074 NRBP2-202ENST00000442628 3587 ntAPPRIS P1 TSL 2 BASIC18.02■□□□□ 0.47
PTPN4P29074 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC18.02■□□□□ 0.47
PTPN4P29074 ELF3-201ENST00000359651 4994 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
PTPN4P29074 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC18.02■□□□□ 0.47
PTPN4P29074 TMEM198B-203ENST00000482378 2230 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
PTPN4P29074 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC18.02■□□□□ 0.47
PTPN4P29074 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
PTPN4P29074 LZTS3-203ENST00000360342 4055 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
PTPN4P29074 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
PTPN4P29074 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC18.01■□□□□ 0.47
PTPN4P29074 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC18.01■□□□□ 0.47
PTPN4P29074 AL023806.1-201ENST00000603994 1649 ntBASIC18.01■□□□□ 0.47
PTPN4P29074 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC18.01■□□□□ 0.47
PTPN4P29074 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
PTPN4P29074 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
PTPN4P29074 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
PTPN4P29074 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC18.01■□□□□ 0.47
PTPN4P29074 JKAMP-202ENST00000356057 2524 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
PTPN4P29074 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC18.01■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 69.3 ms