Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
LDB3O75112 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
LDB3O75112 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
LDB3O75112 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
LDB3O75112 MRPS5-201ENST00000272418 1652 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
LDB3O75112 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC16.9■□□□□ 0.3
LDB3O75112 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
LDB3O75112 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
LDB3O75112 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC16.9■□□□□ 0.3
LDB3O75112 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
LDB3O75112 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
LDB3O75112 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
LDB3O75112 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
LDB3O75112 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
LDB3O75112 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC16.89■□□□□ 0.3
LDB3O75112 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC16.89■□□□□ 0.3
LDB3O75112 MAZ-212ENST00000568282 1593 ntTSL 5 BASIC16.89■□□□□ 0.3
LDB3O75112 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC16.89■□□□□ 0.3
LDB3O75112 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
LDB3O75112 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC16.89■□□□□ 0.3
LDB3O75112 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC16.89■□□□□ 0.29
LDB3O75112 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC16.89■□□□□ 0.29
LDB3O75112 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC16.89■□□□□ 0.29
LDB3O75112 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC16.89■□□□□ 0.29
LDB3O75112 JMJD7-201ENST00000397299 1416 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
LDB3O75112 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
LDB3O75112 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
LDB3O75112 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC16.89■□□□□ 0.29
LDB3O75112 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
LDB3O75112 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
LDB3O75112 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
LDB3O75112 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
LDB3O75112 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
LDB3O75112 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC16.89■□□□□ 0.29
LDB3O75112 ELANE-201ENST00000263621 920 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
LDB3O75112 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
LDB3O75112 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
LDB3O75112 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
LDB3O75112 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC16.89■□□□□ 0.29
LDB3O75112 UPK3BP1-201ENST00000428678 509 ntBASIC16.89■□□□□ 0.29
LDB3O75112 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC16.89■□□□□ 0.29
LDB3O75112 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
LDB3O75112 KRTCAP3-207ENST00000543753 956 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
LDB3O75112 ANAPC11-217ENST00000579978 575 ntAPPRIS P1 TSL 2 BASIC16.89■□□□□ 0.29
LDB3O75112 AC090616.6-201ENST00000582640 721 ntBASIC16.89■□□□□ 0.29
LDB3O75112 ANKRD20A8P-203ENST00000641373 517 ntBASIC16.89■□□□□ 0.29
LDB3O75112 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
LDB3O75112 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
LDB3O75112 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC16.89■□□□□ 0.29
LDB3O75112 BCR-201ENST00000305877 7082 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
LDB3O75112 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC16.89■□□□□ 0.29
LDB3O75112 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
LDB3O75112 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
LDB3O75112 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
LDB3O75112 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC16.89■□□□□ 0.29
LDB3O75112 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
LDB3O75112 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC16.88■□□□□ 0.29
LDB3O75112 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
LDB3O75112 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC16.88■□□□□ 0.29
LDB3O75112 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
LDB3O75112 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
LDB3O75112 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
LDB3O75112 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
LDB3O75112 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC16.88■□□□□ 0.29
LDB3O75112 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
LDB3O75112 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
LDB3O75112 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
LDB3O75112 UBE2C-204ENST00000356455 850 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
LDB3O75112 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
LDB3O75112 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
LDB3O75112 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
LDB3O75112 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC16.88■□□□□ 0.29
LDB3O75112 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC16.88■□□□□ 0.29
LDB3O75112 BOC-211ENST00000484034 1286 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
LDB3O75112 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC16.88■□□□□ 0.29
LDB3O75112 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC16.88■□□□□ 0.29
LDB3O75112 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC16.88■□□□□ 0.29
LDB3O75112 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
LDB3O75112 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
LDB3O75112 KRT18P1-202ENST00000452408 1331 ntBASIC16.88■□□□□ 0.29
LDB3O75112 AC022898.2-201ENST00000616822 1312 ntBASIC16.88■□□□□ 0.29
LDB3O75112 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
LDB3O75112 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC16.88■□□□□ 0.29
LDB3O75112 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC16.88■□□□□ 0.29
LDB3O75112 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC16.88■□□□□ 0.29
LDB3O75112 OXSR1-201ENST00000311806 4553 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
LDB3O75112 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
LDB3O75112 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
LDB3O75112 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
LDB3O75112 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
LDB3O75112 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
LDB3O75112 PHKA2-201ENST00000379942 5559 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
LDB3O75112 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC16.87■□□□□ 0.29
LDB3O75112 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC16.87■□□□□ 0.29
LDB3O75112 AQP5-201ENST00000293599 1450 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
LDB3O75112 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC16.87■□□□□ 0.29
LDB3O75112 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC16.87■□□□□ 0.29
LDB3O75112 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC16.87■□□□□ 0.29
LDB3O75112 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC16.87■□□□□ 0.29
LDB3O75112 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC16.87■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 38.5 ms