Protein–RNA interactions for Protein: O14529

CUX2, Homeobox protein cut-like 2, humanhuman

Predictions only

Length 1,486 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX2O14529 AL133338.1-201ENST00000565695 1517 ntBASIC30.45■■■□□ 2.47
CUX2O14529 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC30.45■■■□□ 2.47
CUX2O14529 C9orf24-204ENST00000379127 596 ntTSL 3 BASIC30.45■■■□□ 2.47
CUX2O14529 AP001107.2-202ENST00000528650 480 ntTSL 3 BASIC30.45■■■□□ 2.47
CUX2O14529 AC004233.1-201ENST00000570515 608 ntTSL 4 BASIC30.45■■■□□ 2.47
CUX2O14529 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC30.45■■■□□ 2.47
CUX2O14529 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC30.45■■■□□ 2.47
CUX2O14529 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC30.45■■■□□ 2.47
CUX2O14529 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC30.45■■■□□ 2.47
CUX2O14529 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC30.45■■■□□ 2.46
CUX2O14529 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC30.45■■■□□ 2.46
CUX2O14529 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC30.45■■■□□ 2.46
CUX2O14529 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC30.45■■■□□ 2.46
CUX2O14529 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC30.45■■■□□ 2.46
CUX2O14529 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC30.44■■■□□ 2.46
CUX2O14529 AC007967.3-201ENST00000434308 558 ntBASIC30.44■■■□□ 2.46
CUX2O14529 CERNA1-201ENST00000559779 908 ntTSL 3 BASIC30.44■■■□□ 2.46
CUX2O14529 VAT1-205ENST00000587173 1174 ntTSL 2 BASIC30.44■■■□□ 2.46
CUX2O14529 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC30.44■■■□□ 2.46
CUX2O14529 MZF1-202ENST00000594108 1110 ntTSL 1 (best) BASIC30.44■■■□□ 2.46
CUX2O14529 AC017083.2-201ENST00000608069 979 ntBASIC30.44■■■□□ 2.46
CUX2O14529 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC30.44■■■□□ 2.46
CUX2O14529 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC30.44■■■□□ 2.46
CUX2O14529 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC30.44■■■□□ 2.46
CUX2O14529 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC30.44■■■□□ 2.46
CUX2O14529 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC30.44■■■□□ 2.46
CUX2O14529 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC30.44■■■□□ 2.46
CUX2O14529 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC30.44■■■□□ 2.46
CUX2O14529 GNPTAB-201ENST00000299314 5701 ntAPPRIS P1 TSL 1 (best) BASIC30.44■■■□□ 2.46
CUX2O14529 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC30.44■■■□□ 2.46
CUX2O14529 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC30.44■■■□□ 2.46
CUX2O14529 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC30.44■■■□□ 2.46
CUX2O14529 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC30.44■■■□□ 2.46
CUX2O14529 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC30.44■■■□□ 2.46
CUX2O14529 ADM2-201ENST00000395737 535 ntAPPRIS P1 TSL 1 (best) BASIC30.44■■■□□ 2.46
CUX2O14529 IFT20-214ENST00000585089 1071 ntTSL 1 (best) BASIC30.44■■■□□ 2.46
CUX2O14529 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC30.44■■■□□ 2.46
CUX2O14529 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC30.44■■■□□ 2.46
CUX2O14529 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC30.43■■■□□ 2.46
CUX2O14529 NADK2-206ENST00000506945 1437 ntTSL 2 BASIC30.43■■■□□ 2.46
CUX2O14529 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC30.43■■■□□ 2.46
CUX2O14529 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC30.43■■■□□ 2.46
CUX2O14529 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC30.43■■■□□ 2.46
CUX2O14529 RAPGEF1-203ENST00000372195 6256 ntTSL 1 (best) BASIC30.43■■■□□ 2.46
CUX2O14529 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC30.43■■■□□ 2.46
CUX2O14529 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC30.43■■■□□ 2.46
CUX2O14529 TIMM8BP1-201ENST00000452384 211 ntBASIC30.43■■■□□ 2.46
CUX2O14529 TUBB3-203ENST00000553967 736 ntTSL 2 BASIC30.43■■■□□ 2.46
CUX2O14529 MED16-214ENST00000617672 554 ntTSL 5 BASIC30.43■■■□□ 2.46
CUX2O14529 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC30.43■■■□□ 2.46
CUX2O14529 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC30.43■■■□□ 2.46
CUX2O14529 CTD-2194D22.4-201ENST00000514569 1635 ntTSL 1 (best) BASIC30.43■■■□□ 2.46
CUX2O14529 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC30.42■■■□□ 2.46
CUX2O14529 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC30.42■■■□□ 2.46
CUX2O14529 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC30.42■■■□□ 2.46
CUX2O14529 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC30.42■■■□□ 2.46
CUX2O14529 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC30.42■■■□□ 2.46
CUX2O14529 ZSCAN2-203ENST00000334141 993 ntTSL 1 (best) BASIC30.42■■■□□ 2.46
CUX2O14529 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC30.42■■■□□ 2.46
CUX2O14529 LRRC37A5P-201ENST00000374304 1103 ntTSL 1 (best) BASIC30.42■■■□□ 2.46
CUX2O14529 PABPN1L-202ENST00000419291 1272 ntAPPRIS P1 TSL 1 (best) BASIC30.42■■■□□ 2.46
CUX2O14529 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC30.42■■■□□ 2.46
CUX2O14529 AC092658.1-201ENST00000505836 891 ntBASIC30.42■■■□□ 2.46
CUX2O14529 AC008378.1-201ENST00000521251 496 ntTSL 5 BASIC30.42■■■□□ 2.46
CUX2O14529 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC30.42■■■□□ 2.46
CUX2O14529 MIR4525-201ENST00000580000 75 ntBASIC30.42■■■□□ 2.46
CUX2O14529 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC30.42■■■□□ 2.46
CUX2O14529 TMED1-207ENST00000591695 809 ntTSL 5 BASIC30.42■■■□□ 2.46
CUX2O14529 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC30.42■■■□□ 2.46
CUX2O14529 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC30.41■■■□□ 2.46
CUX2O14529 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC30.41■■■□□ 2.46
CUX2O14529 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC30.41■■■□□ 2.46
CUX2O14529 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC30.41■■■□□ 2.46
CUX2O14529 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC30.41■■■□□ 2.46
CUX2O14529 ASL-204ENST00000395331 1538 ntTSL 5 BASIC30.41■■■□□ 2.46
CUX2O14529 TDG-209ENST00000544861 1387 ntTSL 2 BASIC30.41■■■□□ 2.46
CUX2O14529 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC30.41■■■□□ 2.46
CUX2O14529 AL137003.1-201ENST00000423260 491 ntTSL 5 BASIC30.41■■■□□ 2.46
CUX2O14529 GPS2P2-201ENST00000430745 888 ntBASIC30.41■■■□□ 2.46
CUX2O14529 AL355140.1-201ENST00000457328 398 ntTSL 5 BASIC30.41■■■□□ 2.46
CUX2O14529 AC106772.1-201ENST00000506629 591 ntTSL 3 BASIC30.41■■■□□ 2.46
CUX2O14529 TMEM161B-AS1-212ENST00000513011 833 ntTSL 3 BASIC30.41■■■□□ 2.46
CUX2O14529 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC30.41■■■□□ 2.46
CUX2O14529 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC30.41■■■□□ 2.46
CUX2O14529 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC30.41■■■□□ 2.46
CUX2O14529 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC30.41■■■□□ 2.46
CUX2O14529 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC30.4■■■□□ 2.46
CUX2O14529 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC30.4■■■□□ 2.46
CUX2O14529 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC30.4■■■□□ 2.46
CUX2O14529 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC30.4■■■□□ 2.46
CUX2O14529 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC30.4■■■□□ 2.46
CUX2O14529 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC30.4■■■□□ 2.46
CUX2O14529 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC30.4■■■□□ 2.46
CUX2O14529 HLA-DPB2-205ENST00000435074 1188 ntBASIC30.4■■■□□ 2.46
CUX2O14529 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC30.4■■■□□ 2.46
CUX2O14529 TXNL4A-212ENST00000592957 546 ntTSL 3 BASIC30.4■■■□□ 2.46
CUX2O14529 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC30.4■■■□□ 2.46
CUX2O14529 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC30.4■■■□□ 2.46
CUX2O14529 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC30.4■■■□□ 2.46
CUX2O14529 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC30.4■■■□□ 2.46
Retrieved 100 of 98,524 protein–RNA pairs in 29.8 ms