Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC18.34■□□□□ 0.53
CBX4O00257 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC18.34■□□□□ 0.53
CBX4O00257 AL513523.2-201ENST00000633218 660 ntTSL 3 BASIC18.34■□□□□ 0.53
CBX4O00257 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC18.34■□□□□ 0.53
CBX4O00257 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC18.34■□□□□ 0.53
CBX4O00257 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CBX4O00257 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC18.34■□□□□ 0.53
CBX4O00257 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC18.34■□□□□ 0.53
CBX4O00257 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CBX4O00257 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CBX4O00257 SPRED3-201ENST00000338502 4778 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CBX4O00257 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CBX4O00257 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC18.34■□□□□ 0.53
CBX4O00257 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.53
CBX4O00257 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC18.33■□□□□ 0.53
CBX4O00257 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
CBX4O00257 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.53
CBX4O00257 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
CBX4O00257 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.53
CBX4O00257 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
CBX4O00257 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
CBX4O00257 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC18.33■□□□□ 0.53
CBX4O00257 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
CBX4O00257 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
CBX4O00257 CABP1-201ENST00000288616 1369 ntAPPRIS P4 TSL 1 (best) BASIC18.33■□□□□ 0.53
CBX4O00257 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC18.33■□□□□ 0.53
CBX4O00257 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
CBX4O00257 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC18.33■□□□□ 0.53
CBX4O00257 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
CBX4O00257 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC18.33■□□□□ 0.52
CBX4O00257 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC18.33■□□□□ 0.52
CBX4O00257 FDX1P1-201ENST00000449115 551 ntBASIC18.33■□□□□ 0.52
CBX4O00257 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC18.33■□□□□ 0.52
CBX4O00257 MINOS1P3-201ENST00000457048 203 ntBASIC18.33■□□□□ 0.52
CBX4O00257 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC18.33■□□□□ 0.52
CBX4O00257 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC18.33■□□□□ 0.52
CBX4O00257 AC011498.3-201ENST00000590159 569 ntTSL 4 BASIC18.33■□□□□ 0.52
CBX4O00257 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC18.33■□□□□ 0.52
CBX4O00257 NOL12-207ENST00000611699 903 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
CBX4O00257 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.52
CBX4O00257 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
CBX4O00257 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.52
CBX4O00257 ABALON-201ENST00000629058 1903 ntBASIC18.33■□□□□ 0.52
CBX4O00257 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
CBX4O00257 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.52
CBX4O00257 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CBX4O00257 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC18.32■□□□□ 0.52
CBX4O00257 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
CBX4O00257 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CBX4O00257 PXK-206ENST00000463280 2825 ntTSL 2 BASIC18.32■□□□□ 0.52
CBX4O00257 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
CBX4O00257 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
CBX4O00257 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CBX4O00257 NEFHP1-201ENST00000412845 2629 ntBASIC18.32■□□□□ 0.52
CBX4O00257 ADCY9-201ENST00000294016 7725 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CBX4O00257 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
CBX4O00257 HBZ-201ENST00000252951 755 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CBX4O00257 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC18.32■□□□□ 0.52
CBX4O00257 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC18.32■□□□□ 0.52
CBX4O00257 DYNLL1-203ENST00000392509 814 ntAPPRIS P1 TSL 3 BASIC18.32■□□□□ 0.52
CBX4O00257 PHGR1-201ENST00000448599 436 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
CBX4O00257 KLK12-205ENST00000529888 735 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
CBX4O00257 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC18.32■□□□□ 0.52
CBX4O00257 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC18.32■□□□□ 0.52
CBX4O00257 AL353801.3-201ENST00000609898 542 ntBASIC18.32■□□□□ 0.52
CBX4O00257 KLK5-201ENST00000336334 1563 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CBX4O00257 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
CBX4O00257 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC18.32■□□□□ 0.52
CBX4O00257 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
CBX4O00257 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
CBX4O00257 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC18.32■□□□□ 0.52
CBX4O00257 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
CBX4O00257 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC18.32■□□□□ 0.52
CBX4O00257 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
CBX4O00257 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
CBX4O00257 AP000997.3-201ENST00000623333 2250 ntBASIC18.32■□□□□ 0.52
CBX4O00257 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CBX4O00257 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC18.31■□□□□ 0.52
CBX4O00257 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC18.31■□□□□ 0.52
CBX4O00257 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CBX4O00257 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CBX4O00257 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CBX4O00257 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC18.31■□□□□ 0.52
CBX4O00257 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
CBX4O00257 AC022898.2-201ENST00000616822 1312 ntBASIC18.31■□□□□ 0.52
CBX4O00257 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CBX4O00257 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
CBX4O00257 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
CBX4O00257 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CBX4O00257 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC18.31■□□□□ 0.52
CBX4O00257 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CBX4O00257 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
CBX4O00257 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CBX4O00257 KLK12-202ENST00000319590 1074 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
CBX4O00257 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CBX4O00257 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC18.31■□□□□ 0.52
CBX4O00257 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
CBX4O00257 DUTP2-201ENST00000519164 463 ntBASIC18.31■□□□□ 0.52
CBX4O00257 AC111152.3-201ENST00000569699 673 ntBASIC18.31■□□□□ 0.52
CBX4O00257 AC099336.1-202ENST00000602961 463 ntBASIC18.31■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 21.2 ms