Protein–RNA interactions for Protein: Q9H9A6

LRRC40, Leucine-rich repeat-containing protein 40, humanhuman

Predictions only

Length 602 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC40Q9H9A6 HLA-F-220ENST00000434407 884 ntBASIC18.27■□□□□ 0.52
LRRC40Q9H9A6 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
LRRC40Q9H9A6 KRT18P57-201ENST00000443599 1254 ntBASIC18.27■□□□□ 0.52
LRRC40Q9H9A6 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.52
LRRC40Q9H9A6 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC18.27■□□□□ 0.52
LRRC40Q9H9A6 TEN1-204ENST00000588202 862 ntTSL 3 BASIC18.27■□□□□ 0.52
LRRC40Q9H9A6 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
LRRC40Q9H9A6 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
LRRC40Q9H9A6 FARP1-242ENST00000627049 5103 ntTSL 5 BASIC18.27■□□□□ 0.51
LRRC40Q9H9A6 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC18.27■□□□□ 0.51
LRRC40Q9H9A6 GJA3-201ENST00000241125 5211 ntAPPRIS P1 TSL 3 BASIC18.27■□□□□ 0.51
LRRC40Q9H9A6 ALDH5A1-202ENST00000357578 5248 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.51
LRRC40Q9H9A6 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
LRRC40Q9H9A6 TOR3A-203ENST00000367627 2724 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
LRRC40Q9H9A6 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC18.27■□□□□ 0.51
LRRC40Q9H9A6 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.51
LRRC40Q9H9A6 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.51
LRRC40Q9H9A6 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC18.27■□□□□ 0.51
LRRC40Q9H9A6 STAMBPL1-203ENST00000371926 2532 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
LRRC40Q9H9A6 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC18.26■□□□□ 0.51
LRRC40Q9H9A6 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC18.26■□□□□ 0.51
LRRC40Q9H9A6 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
LRRC40Q9H9A6 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
LRRC40Q9H9A6 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
LRRC40Q9H9A6 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
LRRC40Q9H9A6 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
LRRC40Q9H9A6 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC18.26■□□□□ 0.51
LRRC40Q9H9A6 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
LRRC40Q9H9A6 KLK14-201ENST00000156499 1060 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
LRRC40Q9H9A6 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
LRRC40Q9H9A6 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
LRRC40Q9H9A6 RNF152P1-201ENST00000397754 604 ntBASIC18.26■□□□□ 0.51
LRRC40Q9H9A6 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC18.26■□□□□ 0.51
LRRC40Q9H9A6 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC18.26■□□□□ 0.51
LRRC40Q9H9A6 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC18.26■□□□□ 0.51
LRRC40Q9H9A6 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC18.26■□□□□ 0.51
LRRC40Q9H9A6 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC18.26■□□□□ 0.51
LRRC40Q9H9A6 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
LRRC40Q9H9A6 CD24-206ENST00000620405 586 ntAPPRIS ALT2 TSL 2 BASIC18.26■□□□□ 0.51
LRRC40Q9H9A6 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
LRRC40Q9H9A6 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC18.26■□□□□ 0.51
LRRC40Q9H9A6 SCARB2-201ENST00000264896 4792 ntAPPRIS P2 TSL 1 (best) BASIC18.26■□□□□ 0.51
LRRC40Q9H9A6 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
LRRC40Q9H9A6 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
LRRC40Q9H9A6 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
LRRC40Q9H9A6 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC18.26■□□□□ 0.51
LRRC40Q9H9A6 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
LRRC40Q9H9A6 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC18.26■□□□□ 0.51
LRRC40Q9H9A6 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
LRRC40Q9H9A6 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC18.26■□□□□ 0.51
LRRC40Q9H9A6 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
LRRC40Q9H9A6 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC18.25■□□□□ 0.51
LRRC40Q9H9A6 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
LRRC40Q9H9A6 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC18.25■□□□□ 0.51
LRRC40Q9H9A6 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
LRRC40Q9H9A6 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC18.25■□□□□ 0.51
LRRC40Q9H9A6 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC18.25■□□□□ 0.51
LRRC40Q9H9A6 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC18.25■□□□□ 0.51
LRRC40Q9H9A6 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC18.25■□□□□ 0.51
LRRC40Q9H9A6 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
LRRC40Q9H9A6 FIGNL2-202ENST00000618634 4812 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
LRRC40Q9H9A6 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
LRRC40Q9H9A6 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
LRRC40Q9H9A6 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
LRRC40Q9H9A6 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC18.25■□□□□ 0.51
LRRC40Q9H9A6 TSPY5P-201ENST00000426936 936 ntBASIC18.25■□□□□ 0.51
LRRC40Q9H9A6 KRT18P48-201ENST00000434763 852 ntBASIC18.25■□□□□ 0.51
LRRC40Q9H9A6 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC18.25■□□□□ 0.51
LRRC40Q9H9A6 HOMER2P1-201ENST00000455653 964 ntBASIC18.25■□□□□ 0.51
LRRC40Q9H9A6 SNX5-210ENST00000481323 562 ntTSL 3 BASIC18.25■□□□□ 0.51
LRRC40Q9H9A6 RARRES2-205ENST00000482669 563 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
LRRC40Q9H9A6 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC18.25■□□□□ 0.51
LRRC40Q9H9A6 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC18.25■□□□□ 0.51
LRRC40Q9H9A6 FRRS1L-201ENST00000561981 8197 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
LRRC40Q9H9A6 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
LRRC40Q9H9A6 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
LRRC40Q9H9A6 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
LRRC40Q9H9A6 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
LRRC40Q9H9A6 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
LRRC40Q9H9A6 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
LRRC40Q9H9A6 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC18.24■□□□□ 0.51
LRRC40Q9H9A6 ADAMTS7-201ENST00000388820 5490 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
LRRC40Q9H9A6 TBX18-202ENST00000369663 6245 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
LRRC40Q9H9A6 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
LRRC40Q9H9A6 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
LRRC40Q9H9A6 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
LRRC40Q9H9A6 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC18.24■□□□□ 0.51
LRRC40Q9H9A6 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
LRRC40Q9H9A6 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
LRRC40Q9H9A6 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
LRRC40Q9H9A6 POU4F3-201ENST00000230732 1182 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
LRRC40Q9H9A6 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC18.24■□□□□ 0.51
LRRC40Q9H9A6 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC18.24■□□□□ 0.51
LRRC40Q9H9A6 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
LRRC40Q9H9A6 KRT18P65-201ENST00000439811 1286 ntBASIC18.24■□□□□ 0.51
LRRC40Q9H9A6 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC18.24■□□□□ 0.51
LRRC40Q9H9A6 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC18.24■□□□□ 0.51
LRRC40Q9H9A6 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC18.24■□□□□ 0.51
LRRC40Q9H9A6 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC18.24■□□□□ 0.51
LRRC40Q9H9A6 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC18.24■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 36.2 ms