Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC17.83■□□□□ 0.44
VPS35Q96QK1 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
VPS35Q96QK1 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
VPS35Q96QK1 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.44
VPS35Q96QK1 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
VPS35Q96QK1 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.44
VPS35Q96QK1 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
VPS35Q96QK1 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC17.83■□□□□ 0.44
VPS35Q96QK1 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
VPS35Q96QK1 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC17.83■□□□□ 0.44
VPS35Q96QK1 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
VPS35Q96QK1 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
VPS35Q96QK1 AC007613.1-201ENST00000572811 2597 ntBASIC17.83■□□□□ 0.44
VPS35Q96QK1 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC17.82■□□□□ 0.44
VPS35Q96QK1 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
VPS35Q96QK1 ADCY8-201ENST00000286355 5938 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
VPS35Q96QK1 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
VPS35Q96QK1 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
VPS35Q96QK1 AQP5-201ENST00000293599 1450 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
VPS35Q96QK1 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
VPS35Q96QK1 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
VPS35Q96QK1 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC17.82■□□□□ 0.44
VPS35Q96QK1 ADCY3-201ENST00000260600 5050 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
VPS35Q96QK1 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
VPS35Q96QK1 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC17.82■□□□□ 0.44
VPS35Q96QK1 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
VPS35Q96QK1 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC17.82■□□□□ 0.44
VPS35Q96QK1 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
VPS35Q96QK1 CNPY2-201ENST00000273308 1214 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
VPS35Q96QK1 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
VPS35Q96QK1 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC17.82■□□□□ 0.44
VPS35Q96QK1 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC17.82■□□□□ 0.44
VPS35Q96QK1 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC17.82■□□□□ 0.44
VPS35Q96QK1 AC113382.1-201ENST00000500267 1253 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
VPS35Q96QK1 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC17.82■□□□□ 0.44
VPS35Q96QK1 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
VPS35Q96QK1 CIB2-208ENST00000560618 804 ntTSL 2 BASIC17.82■□□□□ 0.44
VPS35Q96QK1 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
VPS35Q96QK1 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC17.82■□□□□ 0.44
VPS35Q96QK1 AC011498.3-201ENST00000590159 569 ntTSL 4 BASIC17.82■□□□□ 0.44
VPS35Q96QK1 IL11-204ENST00000590625 1028 ntTSL 2 BASIC17.82■□□□□ 0.44
VPS35Q96QK1 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC17.82■□□□□ 0.44
VPS35Q96QK1 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC17.82■□□□□ 0.44
VPS35Q96QK1 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
VPS35Q96QK1 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC17.82■□□□□ 0.44
VPS35Q96QK1 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
VPS35Q96QK1 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
VPS35Q96QK1 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
VPS35Q96QK1 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
VPS35Q96QK1 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
VPS35Q96QK1 BCR-201ENST00000305877 7082 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
VPS35Q96QK1 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC17.82■□□□□ 0.44
VPS35Q96QK1 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC17.82■□□□□ 0.44
VPS35Q96QK1 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC17.81■□□□□ 0.44
VPS35Q96QK1 HEBP2-204ENST00000607197 10014 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
VPS35Q96QK1 KLHL31-201ENST00000370905 5743 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
VPS35Q96QK1 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC17.81■□□□□ 0.44
VPS35Q96QK1 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
VPS35Q96QK1 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
VPS35Q96QK1 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC17.81■□□□□ 0.44
VPS35Q96QK1 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
VPS35Q96QK1 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
VPS35Q96QK1 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
VPS35Q96QK1 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC17.81■□□□□ 0.44
VPS35Q96QK1 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
VPS35Q96QK1 OPRD1-201ENST00000234961 9345 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
VPS35Q96QK1 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC17.81■□□□□ 0.44
VPS35Q96QK1 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
VPS35Q96QK1 C1QC-203ENST00000374640 1163 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
VPS35Q96QK1 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
VPS35Q96QK1 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
VPS35Q96QK1 AL845331.1-201ENST00000424978 1190 ntBASIC17.81■□□□□ 0.44
VPS35Q96QK1 ENO1-AS1-201ENST00000442636 456 ntTSL 2 BASIC17.81■□□□□ 0.44
VPS35Q96QK1 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC17.81■□□□□ 0.44
VPS35Q96QK1 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC17.81■□□□□ 0.44
VPS35Q96QK1 AC112698.1-201ENST00000510299 916 ntBASIC17.81■□□□□ 0.44
VPS35Q96QK1 NMU-205ENST00000511469 756 ntTSL 3 BASIC17.81■□□□□ 0.44
VPS35Q96QK1 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC17.81■□□□□ 0.44
VPS35Q96QK1 MPI-205ENST00000562606 1052 ntTSL 3 BASIC17.81■□□□□ 0.44
VPS35Q96QK1 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
VPS35Q96QK1 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
VPS35Q96QK1 EML2-AS1-203ENST00000623430 886 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
VPS35Q96QK1 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC17.81■□□□□ 0.44
VPS35Q96QK1 NUP153-202ENST00000537253 6030 ntAPPRIS ALT2 TSL 2 BASIC17.81■□□□□ 0.44
VPS35Q96QK1 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
VPS35Q96QK1 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
VPS35Q96QK1 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
VPS35Q96QK1 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
VPS35Q96QK1 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
VPS35Q96QK1 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
VPS35Q96QK1 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
VPS35Q96QK1 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
VPS35Q96QK1 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
VPS35Q96QK1 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC17.81■□□□□ 0.44
VPS35Q96QK1 PPM1H-201ENST00000228705 6353 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
VPS35Q96QK1 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
VPS35Q96QK1 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
VPS35Q96QK1 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
VPS35Q96QK1 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
VPS35Q96QK1 DDX51-202ENST00000397333 4718 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 22.7 ms