Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 PHGDH-209ENST00000641074 1780 ntBASIC17.46■□□□□ 0.39
LMX1AQ8TE12 LAMTOR5-201ENST00000256644 868 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
LMX1AQ8TE12 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
LMX1AQ8TE12 SOD2-201ENST00000337404 991 ntTSL 2 BASIC17.46■□□□□ 0.39
LMX1AQ8TE12 CD9-202ENST00000382515 1229 ntTSL 5 BASIC17.46■□□□□ 0.39
LMX1AQ8TE12 CAPG-203ENST00000409670 1183 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
LMX1AQ8TE12 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
LMX1AQ8TE12 LAMTOR5-204ENST00000483260 694 ntTSL 2 BASIC17.46■□□□□ 0.39
LMX1AQ8TE12 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC17.46■□□□□ 0.39
LMX1AQ8TE12 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
LMX1AQ8TE12 AC106730.1-201ENST00000566722 1090 ntBASIC17.46■□□□□ 0.39
LMX1AQ8TE12 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC17.46■□□□□ 0.39
LMX1AQ8TE12 LAMTOR5-206ENST00000602318 634 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
LMX1AQ8TE12 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC17.46■□□□□ 0.39
LMX1AQ8TE12 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
LMX1AQ8TE12 CROCCP3-202ENST00000420820 1947 ntBASIC17.46■□□□□ 0.39
LMX1AQ8TE12 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
LMX1AQ8TE12 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
LMX1AQ8TE12 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC17.46■□□□□ 0.39
LMX1AQ8TE12 ZNFX1-203ENST00000371754 5235 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
LMX1AQ8TE12 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
LMX1AQ8TE12 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
LMX1AQ8TE12 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
LMX1AQ8TE12 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.38
LMX1AQ8TE12 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
LMX1AQ8TE12 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC17.45■□□□□ 0.38
LMX1AQ8TE12 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC17.45■□□□□ 0.38
LMX1AQ8TE12 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
LMX1AQ8TE12 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
LMX1AQ8TE12 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
LMX1AQ8TE12 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
LMX1AQ8TE12 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
LMX1AQ8TE12 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
LMX1AQ8TE12 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
LMX1AQ8TE12 MIR940-201ENST00000401276 94 ntBASIC17.45■□□□□ 0.38
LMX1AQ8TE12 RAB17-203ENST00000409576 466 ntTSL 3 BASIC17.45■□□□□ 0.38
LMX1AQ8TE12 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
LMX1AQ8TE12 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC17.45■□□□□ 0.38
LMX1AQ8TE12 KRT18P58-201ENST00000527480 1120 ntBASIC17.45■□□□□ 0.38
LMX1AQ8TE12 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC17.45■□□□□ 0.38
LMX1AQ8TE12 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
LMX1AQ8TE12 CLEC11A-203ENST00000617718 1128 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
LMX1AQ8TE12 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
LMX1AQ8TE12 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
LMX1AQ8TE12 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC17.45■□□□□ 0.38
LMX1AQ8TE12 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC17.45■□□□□ 0.38
LMX1AQ8TE12 CHST11-201ENST00000303694 5709 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
LMX1AQ8TE12 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC17.45■□□□□ 0.38
LMX1AQ8TE12 AC097374.2-201ENST00000618617 1306 ntBASIC17.45■□□□□ 0.38
LMX1AQ8TE12 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
LMX1AQ8TE12 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC17.45■□□□□ 0.38
LMX1AQ8TE12 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
LMX1AQ8TE12 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC17.44■□□□□ 0.38
LMX1AQ8TE12 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC17.44■□□□□ 0.38
LMX1AQ8TE12 FGFR1-206ENST00000397091 5702 ntAPPRIS ALT1 TSL 1 (best) BASIC17.44■□□□□ 0.38
LMX1AQ8TE12 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
LMX1AQ8TE12 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC17.44■□□□□ 0.38
LMX1AQ8TE12 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
LMX1AQ8TE12 AL359915.2-201ENST00000425884 745 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
LMX1AQ8TE12 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC17.44■□□□□ 0.38
LMX1AQ8TE12 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC17.44■□□□□ 0.38
LMX1AQ8TE12 AC009567.1-201ENST00000515071 525 ntTSL 4 BASIC17.44■□□□□ 0.38
LMX1AQ8TE12 OR7E14P-202ENST00000530490 1290 ntBASIC17.44■□□□□ 0.38
LMX1AQ8TE12 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC17.44■□□□□ 0.38
LMX1AQ8TE12 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC17.44■□□□□ 0.38
LMX1AQ8TE12 PNMT-203ENST00000581428 677 ntTSL 2 BASIC17.44■□□□□ 0.38
LMX1AQ8TE12 NKAPP1-205ENST00000585790 367 ntBASIC17.44■□□□□ 0.38
LMX1AQ8TE12 AC006538.3-201ENST00000612495 578 ntBASIC17.44■□□□□ 0.38
LMX1AQ8TE12 AL139288.1-201ENST00000623748 933 ntBASIC17.44■□□□□ 0.38
LMX1AQ8TE12 AC117500.6-201ENST00000624871 588 ntBASIC17.44■□□□□ 0.38
LMX1AQ8TE12 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
LMX1AQ8TE12 N4BP3-201ENST00000274605 6080 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
LMX1AQ8TE12 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
LMX1AQ8TE12 BAG5-201ENST00000299204 4848 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
LMX1AQ8TE12 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
LMX1AQ8TE12 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC17.44■□□□□ 0.38
LMX1AQ8TE12 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC17.44■□□□□ 0.38
LMX1AQ8TE12 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
LMX1AQ8TE12 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC17.44■□□□□ 0.38
LMX1AQ8TE12 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
LMX1AQ8TE12 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
LMX1AQ8TE12 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
LMX1AQ8TE12 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
LMX1AQ8TE12 AC093010.1-201ENST00000473625 1624 ntBASIC17.43■□□□□ 0.38
LMX1AQ8TE12 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
LMX1AQ8TE12 SIGLEC10-204ENST00000436984 1776 ntTSL 2 BASIC17.43■□□□□ 0.38
LMX1AQ8TE12 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC17.43■□□□□ 0.38
LMX1AQ8TE12 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
LMX1AQ8TE12 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
LMX1AQ8TE12 ZNF259P1-201ENST00000407656 1365 ntBASIC17.43■□□□□ 0.38
LMX1AQ8TE12 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
LMX1AQ8TE12 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
LMX1AQ8TE12 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
LMX1AQ8TE12 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
LMX1AQ8TE12 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
LMX1AQ8TE12 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
LMX1AQ8TE12 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC17.43■□□□□ 0.38
LMX1AQ8TE12 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC17.43■□□□□ 0.38
LMX1AQ8TE12 MSRB1-202ENST00000399753 847 ntTSL 3 BASIC17.43■□□□□ 0.38
LMX1AQ8TE12 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 32.2 ms