Protein–RNA interactions for Protein: Q8NB14

USP38, Ubiquitin carboxyl-terminal hydrolase 38, humanhuman

Predictions only

Length 1,042 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP38Q8NB14 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
USP38Q8NB14 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
USP38Q8NB14 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC20.05■□□□□ 0.8
USP38Q8NB14 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
USP38Q8NB14 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
USP38Q8NB14 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
USP38Q8NB14 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC20.05■□□□□ 0.8
USP38Q8NB14 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
USP38Q8NB14 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
USP38Q8NB14 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
USP38Q8NB14 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
USP38Q8NB14 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC20.05■□□□□ 0.8
USP38Q8NB14 HAGH-208ENST00000566709 1291 ntTSL 5 BASIC20.05■□□□□ 0.8
USP38Q8NB14 ANAPC11-210ENST00000574924 722 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
USP38Q8NB14 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
USP38Q8NB14 AC010632.1-201ENST00000590376 572 ntTSL 4 BASIC20.05■□□□□ 0.8
USP38Q8NB14 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC20.05■□□□□ 0.8
USP38Q8NB14 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
USP38Q8NB14 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
USP38Q8NB14 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
USP38Q8NB14 ASL-204ENST00000395331 1538 ntTSL 5 BASIC20.05■□□□□ 0.8
USP38Q8NB14 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
USP38Q8NB14 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
USP38Q8NB14 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC20.05■□□□□ 0.8
USP38Q8NB14 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
USP38Q8NB14 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
USP38Q8NB14 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC20.05■□□□□ 0.8
USP38Q8NB14 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
USP38Q8NB14 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
USP38Q8NB14 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC20.04■□□□□ 0.8
USP38Q8NB14 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC20.04■□□□□ 0.8
USP38Q8NB14 NOC2LP2-201ENST00000407594 1944 ntBASIC20.04■□□□□ 0.8
USP38Q8NB14 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
USP38Q8NB14 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC20.04■□□□□ 0.8
USP38Q8NB14 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
USP38Q8NB14 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
USP38Q8NB14 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
USP38Q8NB14 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC20.04■□□□□ 0.8
USP38Q8NB14 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
USP38Q8NB14 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC20.04■□□□□ 0.8
USP38Q8NB14 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
USP38Q8NB14 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
USP38Q8NB14 AC098831.1-202ENST00000438821 336 ntBASIC20.04■□□□□ 0.8
USP38Q8NB14 RPL13AP23-201ENST00000480739 586 ntBASIC20.04■□□□□ 0.8
USP38Q8NB14 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
USP38Q8NB14 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC20.04■□□□□ 0.8
USP38Q8NB14 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
USP38Q8NB14 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
USP38Q8NB14 ANO7L1-203ENST00000602586 1720 ntBASIC20.04■□□□□ 0.8
USP38Q8NB14 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
USP38Q8NB14 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC20.04■□□□□ 0.8
USP38Q8NB14 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC20.04■□□□□ 0.8
USP38Q8NB14 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC20.04■□□□□ 0.8
USP38Q8NB14 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
USP38Q8NB14 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
USP38Q8NB14 IRGC-201ENST00000244314 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
USP38Q8NB14 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC20.03■□□□□ 0.8
USP38Q8NB14 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
USP38Q8NB14 PRRG3-205ENST00000538575 1303 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
USP38Q8NB14 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
USP38Q8NB14 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC20.03■□□□□ 0.8
USP38Q8NB14 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
USP38Q8NB14 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC20.03■□□□□ 0.8
USP38Q8NB14 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC20.03■□□□□ 0.8
USP38Q8NB14 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC20.03■□□□□ 0.8
USP38Q8NB14 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
USP38Q8NB14 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC20.03■□□□□ 0.8
USP38Q8NB14 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
USP38Q8NB14 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
USP38Q8NB14 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC20.03■□□□□ 0.8
USP38Q8NB14 MED22-202ENST00000371999 987 ntTSL 3 BASIC20.03■□□□□ 0.8
USP38Q8NB14 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC20.03■□□□□ 0.8
USP38Q8NB14 RPS8P6-201ENST00000426177 609 ntBASIC20.03■□□□□ 0.8
USP38Q8NB14 KRT18P67-201ENST00000432816 1264 ntBASIC20.03■□□□□ 0.8
USP38Q8NB14 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC20.03■□□□□ 0.8
USP38Q8NB14 MINOS1P3-201ENST00000457048 203 ntBASIC20.03■□□□□ 0.8
USP38Q8NB14 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC20.03■□□□□ 0.8
USP38Q8NB14 PGAM5P1-201ENST00000518923 814 ntBASIC20.03■□□□□ 0.8
USP38Q8NB14 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
USP38Q8NB14 AP005901.3-202ENST00000581653 237 ntBASIC20.03■□□□□ 0.8
USP38Q8NB14 AL049840.3-201ENST00000602669 611 ntBASIC20.03■□□□□ 0.8
USP38Q8NB14 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
USP38Q8NB14 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
USP38Q8NB14 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC20.03■□□□□ 0.8
USP38Q8NB14 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
USP38Q8NB14 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC20.03■□□□□ 0.8
USP38Q8NB14 AC009102.3-201ENST00000623118 1491 ntBASIC20.03■□□□□ 0.8
USP38Q8NB14 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
USP38Q8NB14 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC20.03■□□□□ 0.8
USP38Q8NB14 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
USP38Q8NB14 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
USP38Q8NB14 AC020763.4-201ENST00000623414 4170 ntBASIC20.02■□□□□ 0.8
USP38Q8NB14 PCDHB18P-201ENST00000524813 2368 ntBASIC20.02■□□□□ 0.8
USP38Q8NB14 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
USP38Q8NB14 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
USP38Q8NB14 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
USP38Q8NB14 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
USP38Q8NB14 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC20.02■□□□□ 0.8
USP38Q8NB14 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
USP38Q8NB14 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC20.02■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 25.1 ms