Protein–RNA interactions for Protein: Q8IXF0

NPAS3, Neuronal PAS domain-containing protein 3, humanhuman

Predictions only

Length 933 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3Q8IXF0 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
NPAS3Q8IXF0 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
NPAS3Q8IXF0 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC18.53■□□□□ 0.56
NPAS3Q8IXF0 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC18.53■□□□□ 0.56
NPAS3Q8IXF0 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC18.53■□□□□ 0.56
NPAS3Q8IXF0 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC18.53■□□□□ 0.56
NPAS3Q8IXF0 YBX2P1-201ENST00000394192 760 ntBASIC18.53■□□□□ 0.56
NPAS3Q8IXF0 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC18.53■□□□□ 0.56
NPAS3Q8IXF0 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC18.53■□□□□ 0.56
NPAS3Q8IXF0 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC18.53■□□□□ 0.56
NPAS3Q8IXF0 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC18.53■□□□□ 0.56
NPAS3Q8IXF0 TNXA-203ENST00000507684 2038 ntBASIC18.53■□□□□ 0.56
NPAS3Q8IXF0 PMPCAP1-201ENST00000508114 1576 ntBASIC18.53■□□□□ 0.56
NPAS3Q8IXF0 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
NPAS3Q8IXF0 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC18.53■□□□□ 0.56
NPAS3Q8IXF0 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC18.53■□□□□ 0.56
NPAS3Q8IXF0 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC18.53■□□□□ 0.56
NPAS3Q8IXF0 AC040169.1-201ENST00000565382 521 ntBASIC18.53■□□□□ 0.56
NPAS3Q8IXF0 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC18.53■□□□□ 0.56
NPAS3Q8IXF0 AL022326.1-202ENST00000641533 845 ntBASIC18.53■□□□□ 0.56
NPAS3Q8IXF0 ADORA2A-201ENST00000337539 2569 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
NPAS3Q8IXF0 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
NPAS3Q8IXF0 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC18.53■□□□□ 0.56
NPAS3Q8IXF0 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
NPAS3Q8IXF0 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC18.53■□□□□ 0.56
NPAS3Q8IXF0 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC18.53■□□□□ 0.56
NPAS3Q8IXF0 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
NPAS3Q8IXF0 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
NPAS3Q8IXF0 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC18.52■□□□□ 0.56
NPAS3Q8IXF0 ESPNP-201ENST00000270691 2015 ntBASIC18.52■□□□□ 0.56
NPAS3Q8IXF0 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC18.52■□□□□ 0.56
NPAS3Q8IXF0 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC18.52■□□□□ 0.56
NPAS3Q8IXF0 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
NPAS3Q8IXF0 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
NPAS3Q8IXF0 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC18.52■□□□□ 0.56
NPAS3Q8IXF0 AC010460.3-201ENST00000511359 1579 ntBASIC18.52■□□□□ 0.56
NPAS3Q8IXF0 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
NPAS3Q8IXF0 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
NPAS3Q8IXF0 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC18.52■□□□□ 0.56
NPAS3Q8IXF0 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC18.52■□□□□ 0.56
NPAS3Q8IXF0 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC18.52■□□□□ 0.56
NPAS3Q8IXF0 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC18.52■□□□□ 0.56
NPAS3Q8IXF0 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC18.52■□□□□ 0.56
NPAS3Q8IXF0 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
NPAS3Q8IXF0 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC18.52■□□□□ 0.56
NPAS3Q8IXF0 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
NPAS3Q8IXF0 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC18.52■□□□□ 0.56
NPAS3Q8IXF0 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC18.52■□□□□ 0.56
NPAS3Q8IXF0 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC18.52■□□□□ 0.56
NPAS3Q8IXF0 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC18.52■□□□□ 0.56
NPAS3Q8IXF0 AC096633.1-201ENST00000422446 749 ntBASIC18.52■□□□□ 0.56
NPAS3Q8IXF0 AC007967.2-201ENST00000432613 625 ntBASIC18.52■□□□□ 0.56
NPAS3Q8IXF0 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
NPAS3Q8IXF0 AC009947.1-201ENST00000444350 727 ntBASIC18.52■□□□□ 0.56
NPAS3Q8IXF0 FBF1-204ENST00000586631 621 ntAPPRIS ALT2 TSL 2 BASIC18.52■□□□□ 0.56
NPAS3Q8IXF0 AC073592.4-201ENST00000623827 446 ntBASIC18.52■□□□□ 0.56
NPAS3Q8IXF0 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC18.52■□□□□ 0.56
NPAS3Q8IXF0 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC18.52■□□□□ 0.56
NPAS3Q8IXF0 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC18.52■□□□□ 0.56
NPAS3Q8IXF0 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
NPAS3Q8IXF0 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC18.52■□□□□ 0.55
NPAS3Q8IXF0 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC18.51■□□□□ 0.55
NPAS3Q8IXF0 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC18.51■□□□□ 0.55
NPAS3Q8IXF0 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
NPAS3Q8IXF0 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC18.51■□□□□ 0.55
NPAS3Q8IXF0 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
NPAS3Q8IXF0 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
NPAS3Q8IXF0 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC18.51■□□□□ 0.55
NPAS3Q8IXF0 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC18.51■□□□□ 0.55
NPAS3Q8IXF0 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
NPAS3Q8IXF0 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
NPAS3Q8IXF0 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC18.51■□□□□ 0.55
NPAS3Q8IXF0 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC18.51■□□□□ 0.55
NPAS3Q8IXF0 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
NPAS3Q8IXF0 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
NPAS3Q8IXF0 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC18.51■□□□□ 0.55
NPAS3Q8IXF0 LINC01705-201ENST00000438158 562 ntTSL 2 BASIC18.51■□□□□ 0.55
NPAS3Q8IXF0 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC18.51■□□□□ 0.55
NPAS3Q8IXF0 FIS1-203ENST00000442303 631 ntTSL 3 BASIC18.51■□□□□ 0.55
NPAS3Q8IXF0 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC18.51■□□□□ 0.55
NPAS3Q8IXF0 RNA5SP416-201ENST00000516838 111 ntBASIC18.51■□□□□ 0.55
NPAS3Q8IXF0 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
NPAS3Q8IXF0 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC18.51■□□□□ 0.55
NPAS3Q8IXF0 AC008481.3-201ENST00000585656 727 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
NPAS3Q8IXF0 AL139424.1-201ENST00000607572 797 ntBASIC18.51■□□□□ 0.55
NPAS3Q8IXF0 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC18.51■□□□□ 0.55
NPAS3Q8IXF0 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
NPAS3Q8IXF0 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC18.51■□□□□ 0.55
NPAS3Q8IXF0 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
NPAS3Q8IXF0 AL020996.1-203ENST00000536896 2307 ntBASIC18.51■□□□□ 0.55
NPAS3Q8IXF0 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
NPAS3Q8IXF0 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
NPAS3Q8IXF0 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
NPAS3Q8IXF0 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC18.51■□□□□ 0.55
NPAS3Q8IXF0 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC18.5■□□□□ 0.55
NPAS3Q8IXF0 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
NPAS3Q8IXF0 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
NPAS3Q8IXF0 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC18.5■□□□□ 0.55
NPAS3Q8IXF0 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC18.5■□□□□ 0.55
NPAS3Q8IXF0 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 31.7 ms