Protein–RNA interactions for Protein: Q08174

PCDH1, Protocadherin-1, humanhuman

Predictions only

Length 1,060 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1Q08174 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC17.35■□□□□ 0.37
PCDH1Q08174 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC17.35■□□□□ 0.37
PCDH1Q08174 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
PCDH1Q08174 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
PCDH1Q08174 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
PCDH1Q08174 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
PCDH1Q08174 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
PCDH1Q08174 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC17.35■□□□□ 0.37
PCDH1Q08174 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
PCDH1Q08174 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
PCDH1Q08174 IGHGP-201ENST00000390555 1178 ntBASIC17.35■□□□□ 0.37
PCDH1Q08174 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
PCDH1Q08174 DDT-203ENST00000403754 569 ntTSL 3 BASIC17.35■□□□□ 0.37
PCDH1Q08174 DDT-206ENST00000430101 573 ntTSL 2 BASIC17.35■□□□□ 0.37
PCDH1Q08174 KRT18P57-201ENST00000443599 1254 ntBASIC17.35■□□□□ 0.37
PCDH1Q08174 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC17.35■□□□□ 0.37
PCDH1Q08174 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
PCDH1Q08174 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC17.35■□□□□ 0.37
PCDH1Q08174 PPOX-214ENST00000535223 664 ntTSL 3 BASIC17.35■□□□□ 0.37
PCDH1Q08174 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC17.35■□□□□ 0.37
PCDH1Q08174 NAA38-203ENST00000575071 553 ntTSL 2 BASIC17.35■□□□□ 0.37
PCDH1Q08174 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
PCDH1Q08174 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
PCDH1Q08174 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC17.35■□□□□ 0.37
PCDH1Q08174 AC009154.2-201ENST00000621177 724 ntBASIC17.35■□□□□ 0.37
PCDH1Q08174 DFFB-212ENST00000625756 649 ntTSL 5 BASIC17.35■□□□□ 0.37
PCDH1Q08174 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC17.35■□□□□ 0.37
PCDH1Q08174 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
PCDH1Q08174 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
PCDH1Q08174 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC17.35■□□□□ 0.37
PCDH1Q08174 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
PCDH1Q08174 IL6R-202ENST00000368485 5914 ntAPPRIS P4 TSL 1 (best) BASIC17.35■□□□□ 0.37
PCDH1Q08174 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
PCDH1Q08174 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
PCDH1Q08174 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
PCDH1Q08174 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC17.35■□□□□ 0.37
PCDH1Q08174 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC17.35■□□□□ 0.37
PCDH1Q08174 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
PCDH1Q08174 HCK-210ENST00000629881 1969 ntAPPRIS ALT2 TSL 2 BASIC17.35■□□□□ 0.37
PCDH1Q08174 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
PCDH1Q08174 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC17.35■□□□□ 0.37
PCDH1Q08174 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC17.35■□□□□ 0.37
PCDH1Q08174 OPRD1-201ENST00000234961 9345 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
PCDH1Q08174 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC17.34■□□□□ 0.37
PCDH1Q08174 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
PCDH1Q08174 PKD1P1-201ENST00000458669 6805 ntBASIC17.34■□□□□ 0.37
PCDH1Q08174 CACNA1B-205ENST00000371363 9758 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
PCDH1Q08174 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
PCDH1Q08174 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
PCDH1Q08174 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC17.34■□□□□ 0.37
PCDH1Q08174 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC17.34■□□□□ 0.37
PCDH1Q08174 CACNA1A-201ENST00000360228 8627 ntAPPRIS P4 TSL 1 (best) BASIC17.34■□□□□ 0.37
PCDH1Q08174 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC17.34■□□□□ 0.37
PCDH1Q08174 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
PCDH1Q08174 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC17.34■□□□□ 0.37
PCDH1Q08174 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
PCDH1Q08174 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC17.34■□□□□ 0.37
PCDH1Q08174 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
PCDH1Q08174 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
PCDH1Q08174 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC17.34■□□□□ 0.37
PCDH1Q08174 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
PCDH1Q08174 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
PCDH1Q08174 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
PCDH1Q08174 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC17.34■□□□□ 0.37
PCDH1Q08174 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
PCDH1Q08174 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC17.34■□□□□ 0.37
PCDH1Q08174 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
PCDH1Q08174 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
PCDH1Q08174 FGF14-AS2-201ENST00000606448 1074 ntBASIC17.34■□□□□ 0.37
PCDH1Q08174 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC17.34■□□□□ 0.37
PCDH1Q08174 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
PCDH1Q08174 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC17.34■□□□□ 0.37
PCDH1Q08174 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC17.34■□□□□ 0.37
PCDH1Q08174 CASKIN2-201ENST00000321617 5015 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
PCDH1Q08174 BRI3BP-201ENST00000341446 6648 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
PCDH1Q08174 SYT15-202ENST00000374323 6428 ntTSL 2 BASIC17.34■□□□□ 0.37
PCDH1Q08174 LTB4R2-202ENST00000528054 3092 ntBASIC17.34■□□□□ 0.37
PCDH1Q08174 KCNQ2-213ENST00000626839 9213 ntAPPRIS ALT1 TSL 1 (best) BASIC17.34■□□□□ 0.37
PCDH1Q08174 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
PCDH1Q08174 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC17.34■□□□□ 0.37
PCDH1Q08174 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.37
PCDH1Q08174 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
PCDH1Q08174 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC17.33■□□□□ 0.37
PCDH1Q08174 MEGF9-201ENST00000373930 6298 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.37
PCDH1Q08174 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
PCDH1Q08174 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
PCDH1Q08174 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
PCDH1Q08174 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.37
PCDH1Q08174 GJA3-201ENST00000241125 5211 ntAPPRIS P1 TSL 3 BASIC17.33■□□□□ 0.37
PCDH1Q08174 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.37
PCDH1Q08174 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
PCDH1Q08174 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
PCDH1Q08174 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
PCDH1Q08174 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
PCDH1Q08174 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
PCDH1Q08174 MAGI3-201ENST00000307546 6430 ntTSL 5 BASIC17.33■□□□□ 0.36
PCDH1Q08174 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
PCDH1Q08174 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
PCDH1Q08174 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
PCDH1Q08174 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC17.33■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 27.5 ms