Protein–RNA interactions for Protein: P54868

HMGCS2, Hydroxymethylglutaryl-CoA synthase, mitochondrial, humanhuman

Predictions only

Length 508 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS2P54868 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC20.65■□□□□ 0.9
HMGCS2P54868 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
HMGCS2P54868 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
HMGCS2P54868 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC20.65■□□□□ 0.9
HMGCS2P54868 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC20.65■□□□□ 0.9
HMGCS2P54868 SIGLEC16-201ENST00000599858 1437 ntBASIC20.65■□□□□ 0.9
HMGCS2P54868 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
HMGCS2P54868 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
HMGCS2P54868 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC20.65■□□□□ 0.9
HMGCS2P54868 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
HMGCS2P54868 AC004832.2-201ENST00000426397 482 ntBASIC20.65■□□□□ 0.9
HMGCS2P54868 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC20.65■□□□□ 0.9
HMGCS2P54868 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC20.65■□□□□ 0.9
HMGCS2P54868 AP001160.2-201ENST00000596071 487 ntBASIC20.65■□□□□ 0.9
HMGCS2P54868 AC073592.5-201ENST00000624854 528 ntBASIC20.65■□□□□ 0.9
HMGCS2P54868 AC005593.1-201ENST00000624894 515 ntBASIC20.65■□□□□ 0.9
HMGCS2P54868 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC20.65■□□□□ 0.9
HMGCS2P54868 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
HMGCS2P54868 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC20.65■□□□□ 0.9
HMGCS2P54868 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC20.64■□□□□ 0.9
HMGCS2P54868 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC20.64■□□□□ 0.9
HMGCS2P54868 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC20.64■□□□□ 0.9
HMGCS2P54868 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC20.64■□□□□ 0.9
HMGCS2P54868 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
HMGCS2P54868 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.9
HMGCS2P54868 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
HMGCS2P54868 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.89
HMGCS2P54868 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC20.64■□□□□ 0.89
HMGCS2P54868 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC20.64■□□□□ 0.89
HMGCS2P54868 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC20.64■□□□□ 0.89
HMGCS2P54868 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
HMGCS2P54868 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
HMGCS2P54868 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.89
HMGCS2P54868 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC20.64■□□□□ 0.89
HMGCS2P54868 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC20.64■□□□□ 0.89
HMGCS2P54868 PARK7-203ENST00000377491 977 ntAPPRIS P1 TSL 3 BASIC20.64■□□□□ 0.89
HMGCS2P54868 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC20.64■□□□□ 0.89
HMGCS2P54868 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC20.64■□□□□ 0.89
HMGCS2P54868 RFX3-AS1-201ENST00000423112 552 ntTSL 3 BASIC20.64■□□□□ 0.89
HMGCS2P54868 PRYP5-201ENST00000451909 266 ntBASIC20.64■□□□□ 0.89
HMGCS2P54868 AC108751.1-201ENST00000490852 363 ntBASIC20.64■□□□□ 0.89
HMGCS2P54868 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC20.64■□□□□ 0.89
HMGCS2P54868 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
HMGCS2P54868 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC20.64■□□□□ 0.89
HMGCS2P54868 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC20.64■□□□□ 0.89
HMGCS2P54868 ETFA-208ENST00000559602 792 ntTSL 3 BASIC20.64■□□□□ 0.89
HMGCS2P54868 AC002347.1-201ENST00000569543 541 ntBASIC20.64■□□□□ 0.89
HMGCS2P54868 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC20.64■□□□□ 0.89
HMGCS2P54868 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC20.64■□□□□ 0.89
HMGCS2P54868 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC20.64■□□□□ 0.89
HMGCS2P54868 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
HMGCS2P54868 AC064836.3-201ENST00000607928 673 ntBASIC20.64■□□□□ 0.89
HMGCS2P54868 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC20.64■□□□□ 0.89
HMGCS2P54868 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC20.64■□□□□ 0.89
HMGCS2P54868 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC20.64■□□□□ 0.89
HMGCS2P54868 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
HMGCS2P54868 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
HMGCS2P54868 SIRPAP1-201ENST00000448467 1770 ntBASIC20.64■□□□□ 0.89
HMGCS2P54868 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.89
HMGCS2P54868 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.89
HMGCS2P54868 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC20.63■□□□□ 0.89
HMGCS2P54868 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
HMGCS2P54868 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
HMGCS2P54868 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC20.63■□□□□ 0.89
HMGCS2P54868 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
HMGCS2P54868 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC20.63■□□□□ 0.89
HMGCS2P54868 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
HMGCS2P54868 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC20.63■□□□□ 0.89
HMGCS2P54868 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC20.63■□□□□ 0.89
HMGCS2P54868 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
HMGCS2P54868 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC20.63■□□□□ 0.89
HMGCS2P54868 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC20.63■□□□□ 0.89
HMGCS2P54868 ALKBH6-201ENST00000252984 955 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
HMGCS2P54868 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
HMGCS2P54868 GGCT-205ENST00000409436 954 ntTSL 3 BASIC20.63■□□□□ 0.89
HMGCS2P54868 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
HMGCS2P54868 PON3-205ENST00000451904 1053 ntTSL 3 BASIC20.63■□□□□ 0.89
HMGCS2P54868 AC004967.1-201ENST00000453589 447 ntBASIC20.63■□□□□ 0.89
HMGCS2P54868 AC002116.1-201ENST00000473572 1130 ntTSL 2 BASIC20.63■□□□□ 0.89
HMGCS2P54868 AC136632.2-201ENST00000512891 861 ntBASIC20.63■□□□□ 0.89
HMGCS2P54868 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC20.63■□□□□ 0.89
HMGCS2P54868 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
HMGCS2P54868 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
HMGCS2P54868 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC20.63■□□□□ 0.89
HMGCS2P54868 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC20.63■□□□□ 0.89
HMGCS2P54868 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC20.63■□□□□ 0.89
HMGCS2P54868 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
HMGCS2P54868 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC20.63■□□□□ 0.89
HMGCS2P54868 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
HMGCS2P54868 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
HMGCS2P54868 SP100-208ENST00000427101 1922 ntTSL 2 BASIC20.63■□□□□ 0.89
HMGCS2P54868 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
HMGCS2P54868 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
HMGCS2P54868 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
HMGCS2P54868 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC20.62■□□□□ 0.89
HMGCS2P54868 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
HMGCS2P54868 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC20.62■□□□□ 0.89
HMGCS2P54868 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
HMGCS2P54868 ANKRD54-202ENST00000406423 954 ntTSL 3 BASIC20.62■□□□□ 0.89
HMGCS2P54868 AC103564.2-201ENST00000432853 1299 ntBASIC20.62■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 31.3 ms