Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
SOX3P41225 CNP-204ENST00000472031 1019 ntTSL 2 BASIC16.93■□□□□ 0.3
SOX3P41225 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC16.93■□□□□ 0.3
SOX3P41225 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
SOX3P41225 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC16.93■□□□□ 0.3
SOX3P41225 AC093458.2-201ENST00000623150 629 ntBASIC16.93■□□□□ 0.3
SOX3P41225 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
SOX3P41225 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
SOX3P41225 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
SOX3P41225 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
SOX3P41225 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
SOX3P41225 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
SOX3P41225 BCL2-203ENST00000589955 5011 ntBASIC16.93■□□□□ 0.3
SOX3P41225 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
SOX3P41225 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
SOX3P41225 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC16.93■□□□□ 0.3
SOX3P41225 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
SOX3P41225 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC16.93■□□□□ 0.3
SOX3P41225 DIAPH1-201ENST00000253811 5789 ntAPPRIS ALT2 TSL 5 BASIC16.93■□□□□ 0.3
SOX3P41225 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC16.93■□□□□ 0.3
SOX3P41225 DIAPH1-202ENST00000389054 5795 ntAPPRIS P4 TSL 5 BASIC16.93■□□□□ 0.3
SOX3P41225 DIAPH1-204ENST00000398557 5789 ntAPPRIS ALT2 TSL 5 BASIC16.93■□□□□ 0.3
SOX3P41225 OSBPL1A-204ENST00000399443 3317 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
SOX3P41225 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
SOX3P41225 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
SOX3P41225 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
SOX3P41225 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
SOX3P41225 FZD1-201ENST00000287934 6963 ntAPPRIS P1 BASIC16.92■□□□□ 0.3
SOX3P41225 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC16.92■□□□□ 0.3
SOX3P41225 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
SOX3P41225 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC16.92■□□□□ 0.3
SOX3P41225 AC099398.1-201ENST00000567919 2776 ntBASIC16.92■□□□□ 0.3
SOX3P41225 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC16.92■□□□□ 0.3
SOX3P41225 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
SOX3P41225 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
SOX3P41225 SPRED3-201ENST00000338502 4778 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
SOX3P41225 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
SOX3P41225 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
SOX3P41225 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC16.92■□□□□ 0.3
SOX3P41225 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
SOX3P41225 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
SOX3P41225 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC16.92■□□□□ 0.3
SOX3P41225 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
SOX3P41225 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC16.92■□□□□ 0.3
SOX3P41225 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
SOX3P41225 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
SOX3P41225 AC069148.1-201ENST00000608741 768 ntBASIC16.92■□□□□ 0.3
SOX3P41225 CD24-206ENST00000620405 586 ntAPPRIS ALT2 TSL 2 BASIC16.92■□□□□ 0.3
SOX3P41225 LITAF-220ENST00000620789 692 ntTSL 5 BASIC16.92■□□□□ 0.3
SOX3P41225 WDR6-223ENST00000627177 207 ntTSL 2 BASIC16.92■□□□□ 0.3
SOX3P41225 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
SOX3P41225 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC16.92■□□□□ 0.3
SOX3P41225 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
SOX3P41225 ZGPAT-202ENST00000355969 1871 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
SOX3P41225 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
SOX3P41225 LMTK2-201ENST00000297293 8946 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
SOX3P41225 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
SOX3P41225 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC16.92■□□□□ 0.3
SOX3P41225 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC16.92■□□□□ 0.3
SOX3P41225 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
SOX3P41225 EXTL3-201ENST00000220562 6483 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
SOX3P41225 ZNF710-201ENST00000268154 4617 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
SOX3P41225 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC16.91■□□□□ 0.3
SOX3P41225 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
SOX3P41225 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC16.91■□□□□ 0.3
SOX3P41225 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
SOX3P41225 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
SOX3P41225 POU4F3-201ENST00000230732 1182 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
SOX3P41225 MIR149-201ENST00000384879 89 ntBASIC16.91■□□□□ 0.3
SOX3P41225 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC16.91■□□□□ 0.3
SOX3P41225 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC16.91■□□□□ 0.3
SOX3P41225 NMU-205ENST00000511469 756 ntTSL 3 BASIC16.91■□□□□ 0.3
SOX3P41225 NAA38-203ENST00000575071 553 ntTSL 2 BASIC16.91■□□□□ 0.3
SOX3P41225 AC011498.5-201ENST00000592027 486 ntBASIC16.91■□□□□ 0.3
SOX3P41225 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC16.91■□□□□ 0.3
SOX3P41225 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
SOX3P41225 EIF4G3-214ENST00000634879 5325 ntTSL 5 BASIC16.91■□□□□ 0.3
SOX3P41225 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
SOX3P41225 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC16.91■□□□□ 0.3
SOX3P41225 LINC00896-202ENST00000609602 2128 ntBASIC16.91■□□□□ 0.3
SOX3P41225 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
SOX3P41225 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
SOX3P41225 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
SOX3P41225 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
SOX3P41225 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
SOX3P41225 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
SOX3P41225 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
SOX3P41225 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC16.91■□□□□ 0.3
SOX3P41225 OXSR1-201ENST00000311806 4553 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
SOX3P41225 ADAMTS7-201ENST00000388820 5490 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
SOX3P41225 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
SOX3P41225 PMAIP1-202ENST00000316660 1948 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
SOX3P41225 UROS-202ENST00000368778 1556 ntTSL 2 BASIC16.9■□□□□ 0.3
SOX3P41225 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC16.9■□□□□ 0.3
SOX3P41225 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC16.9■□□□□ 0.3
SOX3P41225 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC16.9■□□□□ 0.3
SOX3P41225 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC16.9■□□□□ 0.3
SOX3P41225 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
SOX3P41225 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC16.9■□□□□ 0.3
SOX3P41225 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 25.4 ms