Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 BTBD11-201ENST00000280758 5767 ntAPPRIS P3 TSL 5 BASIC18.92■□□□□ 0.62
BDNFP23560 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
BDNFP23560 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
BDNFP23560 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC18.92■□□□□ 0.62
BDNFP23560 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC18.92■□□□□ 0.62
BDNFP23560 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC18.92■□□□□ 0.62
BDNFP23560 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC18.92■□□□□ 0.62
BDNFP23560 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC18.92■□□□□ 0.62
BDNFP23560 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC18.92■□□□□ 0.62
BDNFP23560 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC18.92■□□□□ 0.62
BDNFP23560 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC18.92■□□□□ 0.62
BDNFP23560 AC009533.2-201ENST00000543664 586 ntBASIC18.92■□□□□ 0.62
BDNFP23560 ZNF772-206ENST00000600175 737 ntTSL 2 BASIC18.92■□□□□ 0.62
BDNFP23560 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC18.92■□□□□ 0.62
BDNFP23560 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
BDNFP23560 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC18.92■□□□□ 0.62
BDNFP23560 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC18.92■□□□□ 0.62
BDNFP23560 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
BDNFP23560 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC18.92■□□□□ 0.62
BDNFP23560 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC18.92■□□□□ 0.62
BDNFP23560 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC18.92■□□□□ 0.62
BDNFP23560 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
BDNFP23560 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC18.91■□□□□ 0.62
BDNFP23560 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
BDNFP23560 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC18.91■□□□□ 0.62
BDNFP23560 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC18.91■□□□□ 0.62
BDNFP23560 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC18.91■□□□□ 0.62
BDNFP23560 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
BDNFP23560 CREG2-201ENST00000324768 6383 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
BDNFP23560 LSM5-204ENST00000409909 740 ntTSL 2 BASIC18.91■□□□□ 0.62
BDNFP23560 CAMTA1-IT1-201ENST00000427317 365 ntTSL 3 BASIC18.91■□□□□ 0.62
BDNFP23560 THAP5-204ENST00000438865 868 ntTSL 2 BASIC18.91■□□□□ 0.62
BDNFP23560 AC136604.3-201ENST00000508188 429 ntTSL 3 BASIC18.91■□□□□ 0.62
BDNFP23560 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC18.91■□□□□ 0.62
BDNFP23560 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
BDNFP23560 AC022898.2-201ENST00000616822 1312 ntBASIC18.91■□□□□ 0.62
BDNFP23560 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC18.91■□□□□ 0.62
BDNFP23560 CABP1-201ENST00000288616 1369 ntAPPRIS P4 TSL 1 (best) BASIC18.91■□□□□ 0.62
BDNFP23560 KRT8P47-201ENST00000604727 1398 ntBASIC18.91■□□□□ 0.62
BDNFP23560 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC18.91■□□□□ 0.62
BDNFP23560 MYH7B-201ENST00000262873 6293 ntAPPRIS P2 TSL 1 (best) BASIC18.91■□□□□ 0.62
BDNFP23560 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC18.91■□□□□ 0.62
BDNFP23560 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
BDNFP23560 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC18.91■□□□□ 0.62
BDNFP23560 EFTUD1P1-204ENST00000560401 1798 ntBASIC18.91■□□□□ 0.62
BDNFP23560 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
BDNFP23560 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
BDNFP23560 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC18.9■□□□□ 0.62
BDNFP23560 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC18.9■□□□□ 0.62
BDNFP23560 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC18.9■□□□□ 0.62
BDNFP23560 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC18.9■□□□□ 0.62
BDNFP23560 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
BDNFP23560 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
BDNFP23560 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
BDNFP23560 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
BDNFP23560 C2orf82-202ENST00000409230 663 ntAPPRIS P2 TSL 3 BASIC18.9■□□□□ 0.62
BDNFP23560 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
BDNFP23560 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC18.9■□□□□ 0.62
BDNFP23560 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC18.9■□□□□ 0.62
BDNFP23560 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
BDNFP23560 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
BDNFP23560 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
BDNFP23560 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
BDNFP23560 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC18.9■□□□□ 0.62
BDNFP23560 MAIP1-202ENST00000392290 1386 ntAPPRIS P2 TSL 1 (best) BASIC18.9■□□□□ 0.62
BDNFP23560 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
BDNFP23560 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
BDNFP23560 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC18.9■□□□□ 0.62
BDNFP23560 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
BDNFP23560 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
BDNFP23560 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
BDNFP23560 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC18.9■□□□□ 0.62
BDNFP23560 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
BDNFP23560 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
BDNFP23560 SERPINB6-207ENST00000612421 1570 ntTSL 2 BASIC18.89■□□□□ 0.62
BDNFP23560 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC18.89■□□□□ 0.62
BDNFP23560 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC18.89■□□□□ 0.61
BDNFP23560 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC18.89■□□□□ 0.61
BDNFP23560 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC18.89■□□□□ 0.61
BDNFP23560 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC18.89■□□□□ 0.61
BDNFP23560 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC18.89■□□□□ 0.61
BDNFP23560 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
BDNFP23560 AKR1C7P-201ENST00000305623 895 ntBASIC18.89■□□□□ 0.61
BDNFP23560 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
BDNFP23560 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC18.89■□□□□ 0.61
BDNFP23560 AC026396.1-201ENST00000419388 421 ntBASIC18.89■□□□□ 0.61
BDNFP23560 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
BDNFP23560 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC18.89■□□□□ 0.61
BDNFP23560 RAB34-226ENST00000636772 1180 ntTSL 5 BASIC18.89■□□□□ 0.61
BDNFP23560 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
BDNFP23560 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
BDNFP23560 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
BDNFP23560 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
BDNFP23560 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
BDNFP23560 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC18.89■□□□□ 0.61
BDNFP23560 DHRS7B-206ENST00000579303 1479 ntAPPRIS ALT1 TSL 5 BASIC18.89■□□□□ 0.61
BDNFP23560 PRDM5-201ENST00000264808 5330 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
BDNFP23560 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC18.89■□□□□ 0.61
BDNFP23560 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
BDNFP23560 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 31.2 ms