Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
VCANP13611 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
VCANP13611 KRT8P50-201ENST00000562022 1438 ntBASIC18.46■□□□□ 0.55
VCANP13611 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
VCANP13611 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
VCANP13611 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
VCANP13611 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
VCANP13611 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
VCANP13611 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
VCANP13611 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC18.45■□□□□ 0.54
VCANP13611 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC18.45■□□□□ 0.54
VCANP13611 STMN1-204ENST00000426559 948 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
VCANP13611 PRYP5-201ENST00000451909 266 ntBASIC18.45■□□□□ 0.54
VCANP13611 DNAJC19-208ENST00000486355 828 ntTSL 2 BASIC18.45■□□□□ 0.54
VCANP13611 DNAJC19-209ENST00000491873 769 ntTSL 2 BASIC18.45■□□□□ 0.54
VCANP13611 MIR210HG-203ENST00000533920 816 ntTSL 2 BASIC18.45■□□□□ 0.54
VCANP13611 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC18.45■□□□□ 0.54
VCANP13611 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC18.45■□□□□ 0.54
VCANP13611 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC18.45■□□□□ 0.54
VCANP13611 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
VCANP13611 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC18.45■□□□□ 0.54
VCANP13611 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC18.45■□□□□ 0.54
VCANP13611 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
VCANP13611 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
VCANP13611 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
VCANP13611 CD9-202ENST00000382515 1229 ntTSL 5 BASIC18.45■□□□□ 0.54
VCANP13611 NUTM2A-AS1-212ENST00000458739 733 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
VCANP13611 AP001995.1-201ENST00000531784 1157 ntTSL 4 BASIC18.45■□□□□ 0.54
VCANP13611 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC18.45■□□□□ 0.54
VCANP13611 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC18.45■□□□□ 0.54
VCANP13611 AL390754.1-201ENST00000619088 582 ntBASIC18.45■□□□□ 0.54
VCANP13611 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC18.45■□□□□ 0.54
VCANP13611 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC18.45■□□□□ 0.54
VCANP13611 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC18.45■□□□□ 0.54
VCANP13611 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC18.45■□□□□ 0.54
VCANP13611 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
VCANP13611 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC18.45■□□□□ 0.54
VCANP13611 GULP1-209ENST00000410051 1595 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
VCANP13611 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
VCANP13611 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC18.45■□□□□ 0.54
VCANP13611 NDUFA4L2-202ENST00000554503 1177 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
VCANP13611 AC027088.1-201ENST00000557966 1117 ntTSL 2 BASIC18.45■□□□□ 0.54
VCANP13611 AL162274.1-201ENST00000617191 1098 ntBASIC18.45■□□□□ 0.54
VCANP13611 AL732314.4-201ENST00000627627 515 ntTSL 4 BASIC18.45■□□□□ 0.54
VCANP13611 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
VCANP13611 TEX21P-204ENST00000641479 1693 ntBASIC18.44■□□□□ 0.54
VCANP13611 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
VCANP13611 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC18.44■□□□□ 0.54
VCANP13611 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC18.44■□□□□ 0.54
VCANP13611 TBC1D16-205ENST00000572862 1141 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
VCANP13611 GOLGA2P11-201ENST00000562660 1621 ntBASIC18.44■□□□□ 0.54
VCANP13611 GNAS-203ENST00000306120 1878 ntBASIC18.44■□□□□ 0.54
VCANP13611 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
VCANP13611 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
VCANP13611 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC18.44■□□□□ 0.54
VCANP13611 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC18.44■□□□□ 0.54
VCANP13611 ASNA1-204ENST00000591090 1368 ntAPPRIS P1 TSL 5 BASIC18.44■□□□□ 0.54
VCANP13611 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC18.44■□□□□ 0.54
VCANP13611 CABP2-201ENST00000294288 925 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
VCANP13611 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC18.44■□□□□ 0.54
VCANP13611 ZNF772-206ENST00000600175 737 ntTSL 2 BASIC18.44■□□□□ 0.54
VCANP13611 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC18.44■□□□□ 0.54
VCANP13611 AL163051.1-201ENST00000569214 1512 ntBASIC18.44■□□□□ 0.54
VCANP13611 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
VCANP13611 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
VCANP13611 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC18.44■□□□□ 0.54
VCANP13611 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC18.44■□□□□ 0.54
VCANP13611 CTD-2194D22.4-201ENST00000514569 1635 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
VCANP13611 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
VCANP13611 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC18.44■□□□□ 0.54
VCANP13611 ME2-218ENST00000640965 2476 ntTSL 5 BASIC18.44■□□□□ 0.54
VCANP13611 AC004233.1-201ENST00000570515 608 ntTSL 4 BASIC18.44■□□□□ 0.54
VCANP13611 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
VCANP13611 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC18.44■□□□□ 0.54
VCANP13611 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC18.44■□□□□ 0.54
VCANP13611 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC18.44■□□□□ 0.54
VCANP13611 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
VCANP13611 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
VCANP13611 POP5-202ENST00000357500 801 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
VCANP13611 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC18.43■□□□□ 0.54
VCANP13611 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
VCANP13611 AC091053.1-201ENST00000529883 744 ntTSL 3 BASIC18.43■□□□□ 0.54
VCANP13611 AC096734.2-201ENST00000562054 433 ntBASIC18.43■□□□□ 0.54
VCANP13611 AC027575.2-201ENST00000585258 1295 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
VCANP13611 AL353135.1-201ENST00000606729 504 ntBASIC18.43■□□□□ 0.54
VCANP13611 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC18.43■□□□□ 0.54
VCANP13611 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC18.43■□□□□ 0.54
VCANP13611 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC18.43■□□□□ 0.54
VCANP13611 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC18.43■□□□□ 0.54
VCANP13611 CLDN5-201ENST00000403084 2357 ntBASIC18.43■□□□□ 0.54
VCANP13611 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
VCANP13611 MOV10L1-203ENST00000395852 1422 ntTSL 2 BASIC18.43■□□□□ 0.54
VCANP13611 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC18.43■□□□□ 0.54
VCANP13611 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
VCANP13611 SPAG11A-201ENST00000326558 612 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
VCANP13611 ARTN-206ENST00000472435 402 ntTSL 3 BASIC18.43■□□□□ 0.54
VCANP13611 RNA5SP423-201ENST00000517127 109 ntBASIC18.43■□□□□ 0.54
VCANP13611 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
VCANP13611 ICOSLG-201ENST00000344330 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
VCANP13611 AC008429.1-203ENST00000518894 548 ntTSL 4 BASIC18.42■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 25.8 ms