Protein–RNA interactions for Protein: P13378

HOXD8, Homeobox protein Hox-D8, humanhuman

Predicted RBP Predictions only

Length 290 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD8P13378 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC19.71■□□□□ 0.75
HOXD8P13378 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
HOXD8P13378 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
HOXD8P13378 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
HOXD8P13378 WIZP1-201ENST00000531444 2299 ntBASIC19.71■□□□□ 0.75
HOXD8P13378 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
HOXD8P13378 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
HOXD8P13378 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
HOXD8P13378 AL020989.1-201ENST00000422979 469 ntBASIC19.71■□□□□ 0.75
HOXD8P13378 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC19.71■□□□□ 0.75
HOXD8P13378 AC009567.1-201ENST00000515071 525 ntTSL 4 BASIC19.71■□□□□ 0.75
HOXD8P13378 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC19.71■□□□□ 0.75
HOXD8P13378 PGM5P2-202ENST00000637225 1043 ntBASIC19.71■□□□□ 0.75
HOXD8P13378 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC19.71■□□□□ 0.75
HOXD8P13378 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
HOXD8P13378 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
HOXD8P13378 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
HOXD8P13378 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC19.71■□□□□ 0.75
HOXD8P13378 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
HOXD8P13378 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
HOXD8P13378 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
HOXD8P13378 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC19.7■□□□□ 0.74
HOXD8P13378 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC19.7■□□□□ 0.74
HOXD8P13378 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
HOXD8P13378 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC19.7■□□□□ 0.74
HOXD8P13378 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
HOXD8P13378 SIRPAP1-201ENST00000448467 1770 ntBASIC19.7■□□□□ 0.74
HOXD8P13378 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC19.7■□□□□ 0.74
HOXD8P13378 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
HOXD8P13378 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
HOXD8P13378 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC19.7■□□□□ 0.74
HOXD8P13378 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
HOXD8P13378 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
HOXD8P13378 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
HOXD8P13378 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
HOXD8P13378 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC19.7■□□□□ 0.74
HOXD8P13378 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC19.7■□□□□ 0.74
HOXD8P13378 ROMO1-201ENST00000336695 496 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
HOXD8P13378 PIGU-202ENST00000374820 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
HOXD8P13378 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC19.7■□□□□ 0.74
HOXD8P13378 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC19.7■□□□□ 0.74
HOXD8P13378 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC19.7■□□□□ 0.74
HOXD8P13378 KRT18P3-201ENST00000451602 1288 ntBASIC19.7■□□□□ 0.74
HOXD8P13378 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC19.7■□□□□ 0.74
HOXD8P13378 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC19.7■□□□□ 0.74
HOXD8P13378 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
HOXD8P13378 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC19.7■□□□□ 0.74
HOXD8P13378 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC19.7■□□□□ 0.74
HOXD8P13378 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC19.7■□□□□ 0.74
HOXD8P13378 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
HOXD8P13378 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
HOXD8P13378 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
HOXD8P13378 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
HOXD8P13378 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC19.7■□□□□ 0.74
HOXD8P13378 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
HOXD8P13378 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
HOXD8P13378 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
HOXD8P13378 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
HOXD8P13378 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
HOXD8P13378 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC19.69■□□□□ 0.74
HOXD8P13378 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC19.69■□□□□ 0.74
HOXD8P13378 AP000974.1-201ENST00000623909 2387 ntBASIC19.69■□□□□ 0.74
HOXD8P13378 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
HOXD8P13378 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
HOXD8P13378 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
HOXD8P13378 DPM3-203ENST00000368400 409 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
HOXD8P13378 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC19.69■□□□□ 0.74
HOXD8P13378 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
HOXD8P13378 MIR1233-2-201ENST00000408138 82 ntBASIC19.69■□□□□ 0.74
HOXD8P13378 MIR1233-1-201ENST00000408722 82 ntBASIC19.69■□□□□ 0.74
HOXD8P13378 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC19.69■□□□□ 0.74
HOXD8P13378 AC136632.2-201ENST00000512891 861 ntBASIC19.69■□□□□ 0.74
HOXD8P13378 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC19.69■□□□□ 0.74
HOXD8P13378 AL139424.1-201ENST00000607572 797 ntBASIC19.69■□□□□ 0.74
HOXD8P13378 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
HOXD8P13378 AC004706.3-202ENST00000621574 984 ntBASIC19.69■□□□□ 0.74
HOXD8P13378 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
HOXD8P13378 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC19.69■□□□□ 0.74
HOXD8P13378 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC19.69■□□□□ 0.74
HOXD8P13378 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC19.69■□□□□ 0.74
HOXD8P13378 DHRS7-212ENST00000611054 1321 ntTSL 5 BASIC19.69■□□□□ 0.74
HOXD8P13378 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
HOXD8P13378 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC19.68■□□□□ 0.74
HOXD8P13378 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
HOXD8P13378 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC19.68■□□□□ 0.74
HOXD8P13378 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
HOXD8P13378 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
HOXD8P13378 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
HOXD8P13378 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
HOXD8P13378 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
HOXD8P13378 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
HOXD8P13378 DDX43P3-201ENST00000441064 443 ntBASIC19.68■□□□□ 0.74
HOXD8P13378 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC19.68■□□□□ 0.74
HOXD8P13378 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC19.68■□□□□ 0.74
HOXD8P13378 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC19.68■□□□□ 0.74
HOXD8P13378 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC19.68■□□□□ 0.74
HOXD8P13378 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC19.68■□□□□ 0.74
HOXD8P13378 FBF1-204ENST00000586631 621 ntAPPRIS ALT2 TSL 2 BASIC19.68■□□□□ 0.74
HOXD8P13378 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC19.68■□□□□ 0.74
HOXD8P13378 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 27.9 ms