Protein–RNA interactions for Protein: P08254

MMP3, Stromelysin-1, humanhuman

Predictions only

Length 477 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP3P08254 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
MMP3P08254 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
MMP3P08254 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC19.8■□□□□ 0.76
MMP3P08254 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
MMP3P08254 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
MMP3P08254 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC19.8■□□□□ 0.76
MMP3P08254 PIGU-202ENST00000374820 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
MMP3P08254 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
MMP3P08254 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC19.8■□□□□ 0.76
MMP3P08254 PRYP5-201ENST00000451909 266 ntBASIC19.8■□□□□ 0.76
MMP3P08254 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC19.8■□□□□ 0.76
MMP3P08254 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC19.8■□□□□ 0.76
MMP3P08254 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC19.8■□□□□ 0.76
MMP3P08254 AL096828.2-201ENST00000567259 1965 ntBASIC19.8■□□□□ 0.76
MMP3P08254 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
MMP3P08254 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
MMP3P08254 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC19.8■□□□□ 0.76
MMP3P08254 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
MMP3P08254 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC19.8■□□□□ 0.76
MMP3P08254 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC19.8■□□□□ 0.76
MMP3P08254 SIRPAP1-201ENST00000448467 1770 ntBASIC19.8■□□□□ 0.76
MMP3P08254 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC19.8■□□□□ 0.76
MMP3P08254 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC19.79■□□□□ 0.76
MMP3P08254 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC19.79■□□□□ 0.76
MMP3P08254 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC19.79■□□□□ 0.76
MMP3P08254 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
MMP3P08254 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
MMP3P08254 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC19.79■□□□□ 0.76
MMP3P08254 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC19.79■□□□□ 0.76
MMP3P08254 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC19.79■□□□□ 0.76
MMP3P08254 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
MMP3P08254 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC19.79■□□□□ 0.76
MMP3P08254 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC19.79■□□□□ 0.76
MMP3P08254 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
MMP3P08254 AC009947.1-201ENST00000444350 727 ntBASIC19.79■□□□□ 0.76
MMP3P08254 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC19.79■□□□□ 0.76
MMP3P08254 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC19.79■□□□□ 0.76
MMP3P08254 AC006557.2-201ENST00000592985 1240 ntBASIC19.79■□□□□ 0.76
MMP3P08254 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
MMP3P08254 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
MMP3P08254 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC19.79■□□□□ 0.76
MMP3P08254 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
MMP3P08254 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
MMP3P08254 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
MMP3P08254 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
MMP3P08254 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
MMP3P08254 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
MMP3P08254 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC19.78■□□□□ 0.76
MMP3P08254 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC19.78■□□□□ 0.76
MMP3P08254 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
MMP3P08254 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
MMP3P08254 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
MMP3P08254 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
MMP3P08254 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
MMP3P08254 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC19.78■□□□□ 0.76
MMP3P08254 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
MMP3P08254 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
MMP3P08254 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC19.78■□□□□ 0.76
MMP3P08254 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC19.78■□□□□ 0.76
MMP3P08254 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
MMP3P08254 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC19.78■□□□□ 0.76
MMP3P08254 AC073621.1-201ENST00000392730 636 ntBASIC19.78■□□□□ 0.76
MMP3P08254 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC19.78■□□□□ 0.76
MMP3P08254 HS6ST1P1-201ENST00000481504 1234 ntBASIC19.78■□□□□ 0.76
MMP3P08254 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC19.78■□□□□ 0.76
MMP3P08254 HAGH-208ENST00000566709 1291 ntTSL 5 BASIC19.78■□□□□ 0.76
MMP3P08254 FBF1-204ENST00000586631 621 ntAPPRIS ALT2 TSL 2 BASIC19.78■□□□□ 0.76
MMP3P08254 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
MMP3P08254 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC19.78■□□□□ 0.76
MMP3P08254 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
MMP3P08254 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC19.78■□□□□ 0.76
MMP3P08254 AL353593.2-201ENST00000602529 1483 ntBASIC19.78■□□□□ 0.76
MMP3P08254 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
MMP3P08254 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC19.78■□□□□ 0.76
MMP3P08254 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC19.78■□□□□ 0.76
MMP3P08254 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
MMP3P08254 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
MMP3P08254 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
MMP3P08254 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
MMP3P08254 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC19.78■□□□□ 0.76
MMP3P08254 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
MMP3P08254 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC19.78■□□□□ 0.76
MMP3P08254 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
MMP3P08254 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
MMP3P08254 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
MMP3P08254 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC19.77■□□□□ 0.76
MMP3P08254 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC19.77■□□□□ 0.76
MMP3P08254 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC19.77■□□□□ 0.76
MMP3P08254 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC19.77■□□□□ 0.76
MMP3P08254 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC19.77■□□□□ 0.76
MMP3P08254 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC19.77■□□□□ 0.76
MMP3P08254 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
MMP3P08254 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC19.77■□□□□ 0.76
MMP3P08254 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
MMP3P08254 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
MMP3P08254 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC19.77■□□□□ 0.76
MMP3P08254 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
MMP3P08254 AC007967.2-201ENST00000432613 625 ntBASIC19.77■□□□□ 0.76
MMP3P08254 NKTR-203ENST00000442970 646 ntTSL 2 BASIC19.77■□□□□ 0.76
MMP3P08254 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 52 ms