Protein–RNA interactions for Protein: O43365

HOXA3, Homeobox protein Hox-A3, humanhuman

Predicted RBP Predictions only

Length 443 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA3O43365 EXO5-202ENST00000358527 1892 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
HOXA3O43365 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC14.44□□□□□ -0.1
HOXA3O43365 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC14.44□□□□□ -0.1
HOXA3O43365 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
HOXA3O43365 DAG1-222ENST00000545947 5829 ntAPPRIS P1 TSL 5 BASIC14.44□□□□□ -0.1
HOXA3O43365 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC14.44□□□□□ -0.1
HOXA3O43365 RSRC1-211ENST00000480820 1410 ntAPPRIS P1 TSL 5 BASIC14.44□□□□□ -0.1
HOXA3O43365 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
HOXA3O43365 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC14.44□□□□□ -0.1
HOXA3O43365 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC14.44□□□□□ -0.1
HOXA3O43365 HBA2-201ENST00000251595 605 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
HOXA3O43365 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
HOXA3O43365 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
HOXA3O43365 TSPY2-201ENST00000320701 1161 ntAPPRIS P5 TSL 1 (best) BASIC14.44□□□□□ -0.1
HOXA3O43365 SATB1-AS1-201ENST00000414198 737 ntTSL 2 BASIC14.44□□□□□ -0.1
HOXA3O43365 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
HOXA3O43365 TSPY2-203ENST00000429039 779 ntAPPRIS ALT2 TSL 2 BASIC14.44□□□□□ -0.1
HOXA3O43365 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC14.44□□□□□ -0.1
HOXA3O43365 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
HOXA3O43365 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC14.44□□□□□ -0.1
HOXA3O43365 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC14.44□□□□□ -0.1
HOXA3O43365 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC14.44□□□□□ -0.1
HOXA3O43365 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC14.44□□□□□ -0.1
HOXA3O43365 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC14.44□□□□□ -0.1
HOXA3O43365 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC14.44□□□□□ -0.1
HOXA3O43365 MTDHP3-201ENST00000594186 672 ntBASIC14.44□□□□□ -0.1
HOXA3O43365 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC14.44□□□□□ -0.1
HOXA3O43365 AC023511.2-201ENST00000618803 211 ntBASIC14.44□□□□□ -0.1
HOXA3O43365 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC14.44□□□□□ -0.1
HOXA3O43365 LUC7L-221ENST00000629543 1520 ntTSL 5 BASIC14.44□□□□□ -0.1
HOXA3O43365 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
HOXA3O43365 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC14.44□□□□□ -0.1
HOXA3O43365 ADGRG2-208ENST00000379873 4698 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
HOXA3O43365 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC14.44□□□□□ -0.1
HOXA3O43365 LRP4-201ENST00000378623 8076 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
HOXA3O43365 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC14.44□□□□□ -0.1
HOXA3O43365 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC14.44□□□□□ -0.1
HOXA3O43365 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
HOXA3O43365 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
HOXA3O43365 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
HOXA3O43365 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC14.43□□□□□ -0.1
HOXA3O43365 MDFIC-201ENST00000257724 4598 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
HOXA3O43365 FIGNL2-202ENST00000618634 4812 ntAPPRIS P1 TSL 5 BASIC14.43□□□□□ -0.1
HOXA3O43365 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
HOXA3O43365 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
HOXA3O43365 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC14.43□□□□□ -0.1
HOXA3O43365 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
HOXA3O43365 SULT2B1-201ENST00000201586 1295 ntAPPRIS P4 TSL 1 (best) BASIC14.43□□□□□ -0.1
HOXA3O43365 MED16-201ENST00000269814 1199 ntTSL 5 BASIC14.43□□□□□ -0.1
HOXA3O43365 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC14.43□□□□□ -0.1
HOXA3O43365 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
HOXA3O43365 DANCR-204ENST00000444958 709 ntTSL 3 BASIC14.43□□□□□ -0.1
HOXA3O43365 MEG3-211ENST00000452514 461 ntTSL 3 BASIC14.43□□□□□ -0.1
HOXA3O43365 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC14.43□□□□□ -0.1
HOXA3O43365 AC073648.2-201ENST00000510116 352 ntBASIC14.43□□□□□ -0.1
HOXA3O43365 GZMM-202ENST00000592501 941 ntTSL 3 BASIC14.43□□□□□ -0.1
HOXA3O43365 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC14.43□□□□□ -0.1
HOXA3O43365 AL512343.2-201ENST00000609423 490 ntTSL 2 BASIC14.43□□□□□ -0.1
HOXA3O43365 AC148477.8-201ENST00000624298 468 ntBASIC14.43□□□□□ -0.1
HOXA3O43365 AF228730.7-201ENST00000641842 219 ntBASIC14.43□□□□□ -0.1
HOXA3O43365 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
HOXA3O43365 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
HOXA3O43365 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC14.43□□□□□ -0.1
HOXA3O43365 AQP5-201ENST00000293599 1450 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
HOXA3O43365 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
HOXA3O43365 KIF13B-206ENST00000524189 8745 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
HOXA3O43365 RNF157-201ENST00000269391 4955 ntAPPRIS P3 TSL 1 (best) BASIC14.43□□□□□ -0.1
HOXA3O43365 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC14.43□□□□□ -0.1
HOXA3O43365 KLK5-201ENST00000336334 1563 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
HOXA3O43365 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC14.43□□□□□ -0.1
HOXA3O43365 KIF21B-203ENST00000422435 5519 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
HOXA3O43365 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
HOXA3O43365 ADGRG2-209ENST00000379876 4779 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
HOXA3O43365 PACS2-203ENST00000447393 6365 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
HOXA3O43365 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
HOXA3O43365 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC14.42□□□□□ -0.1
HOXA3O43365 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
HOXA3O43365 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
HOXA3O43365 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
HOXA3O43365 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
HOXA3O43365 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
HOXA3O43365 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
HOXA3O43365 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC14.42□□□□□ -0.1
HOXA3O43365 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC14.42□□□□□ -0.1
HOXA3O43365 ANO7L1-203ENST00000602586 1720 ntBASIC14.42□□□□□ -0.1
HOXA3O43365 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC14.42□□□□□ -0.1
HOXA3O43365 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC14.42□□□□□ -0.1
HOXA3O43365 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC14.42□□□□□ -0.1
HOXA3O43365 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC14.42□□□□□ -0.1
HOXA3O43365 KRT18P65-201ENST00000439811 1286 ntBASIC14.42□□□□□ -0.1
HOXA3O43365 SCARNA2-201ENST00000458748 420 ntBASIC14.42□□□□□ -0.1
HOXA3O43365 AC010226.1-202ENST00000508517 539 ntTSL 2 BASIC14.42□□□□□ -0.1
HOXA3O43365 RNA5SP419-201ENST00000515908 135 ntBASIC14.42□□□□□ -0.1
HOXA3O43365 AC008429.1-203ENST00000518894 548 ntTSL 4 BASIC14.42□□□□□ -0.1
HOXA3O43365 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC14.42□□□□□ -0.1
HOXA3O43365 ZNF772-206ENST00000600175 737 ntTSL 2 BASIC14.42□□□□□ -0.1
HOXA3O43365 AL138831.2-201ENST00000606564 490 ntBASIC14.42□□□□□ -0.1
HOXA3O43365 NME4-212ENST00000621774 904 ntTSL 3 BASIC14.42□□□□□ -0.1
HOXA3O43365 AL355877.3-201ENST00000622820 899 ntBASIC14.42□□□□□ -0.1
HOXA3O43365 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC14.42□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 58.3 ms