Protein–RNA interactions for Protein: Q9Y6I4

USP3, Ubiquitin carboxyl-terminal hydrolase 3, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP3Q9Y6I4 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC18.79■□□□□ 0.6
USP3Q9Y6I4 FLJ13224-201ENST00000313737 1514 ntBASIC18.79■□□□□ 0.6
USP3Q9Y6I4 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
USP3Q9Y6I4 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC18.79■□□□□ 0.6
USP3Q9Y6I4 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
USP3Q9Y6I4 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC18.78■□□□□ 0.6
USP3Q9Y6I4 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC18.78■□□□□ 0.6
USP3Q9Y6I4 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
USP3Q9Y6I4 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
USP3Q9Y6I4 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
USP3Q9Y6I4 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
USP3Q9Y6I4 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC18.78■□□□□ 0.6
USP3Q9Y6I4 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
USP3Q9Y6I4 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC18.78■□□□□ 0.6
USP3Q9Y6I4 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC18.78■□□□□ 0.6
USP3Q9Y6I4 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
USP3Q9Y6I4 C18orf32-201ENST00000318240 1128 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
USP3Q9Y6I4 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
USP3Q9Y6I4 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
USP3Q9Y6I4 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
USP3Q9Y6I4 AL450487.1-201ENST00000426799 995 ntBASIC18.78■□□□□ 0.6
USP3Q9Y6I4 MINOS1P3-201ENST00000457048 203 ntBASIC18.78■□□□□ 0.6
USP3Q9Y6I4 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
USP3Q9Y6I4 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC18.78■□□□□ 0.6
USP3Q9Y6I4 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC18.78■□□□□ 0.6
USP3Q9Y6I4 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
USP3Q9Y6I4 ESYT3-201ENST00000289135 1356 ntTSL 5 BASIC18.78■□□□□ 0.6
USP3Q9Y6I4 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
USP3Q9Y6I4 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
USP3Q9Y6I4 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
USP3Q9Y6I4 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
USP3Q9Y6I4 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC18.78■□□□□ 0.6
USP3Q9Y6I4 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
USP3Q9Y6I4 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
USP3Q9Y6I4 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
USP3Q9Y6I4 AP000997.3-201ENST00000623333 2250 ntBASIC18.77■□□□□ 0.6
USP3Q9Y6I4 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
USP3Q9Y6I4 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
USP3Q9Y6I4 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
USP3Q9Y6I4 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC18.77■□□□□ 0.6
USP3Q9Y6I4 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC18.77■□□□□ 0.6
USP3Q9Y6I4 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
USP3Q9Y6I4 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
USP3Q9Y6I4 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
USP3Q9Y6I4 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
USP3Q9Y6I4 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
USP3Q9Y6I4 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
USP3Q9Y6I4 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC18.77■□□□□ 0.6
USP3Q9Y6I4 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC18.77■□□□□ 0.6
USP3Q9Y6I4 AC096633.1-201ENST00000422446 749 ntBASIC18.77■□□□□ 0.6
USP3Q9Y6I4 DANCR-204ENST00000444958 709 ntTSL 3 BASIC18.77■□□□□ 0.6
USP3Q9Y6I4 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC18.77■□□□□ 0.6
USP3Q9Y6I4 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
USP3Q9Y6I4 AC009533.2-201ENST00000543664 586 ntBASIC18.77■□□□□ 0.6
USP3Q9Y6I4 AL133352.1-203ENST00000557395 1234 ntAPPRIS P5 TSL 2 BASIC18.77■□□□□ 0.6
USP3Q9Y6I4 AL121772.3-201ENST00000610840 674 ntBASIC18.77■□□□□ 0.6
USP3Q9Y6I4 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC18.77■□□□□ 0.6
USP3Q9Y6I4 AL732314.6-201ENST00000627721 484 ntTSL 4 BASIC18.77■□□□□ 0.6
USP3Q9Y6I4 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.6
USP3Q9Y6I4 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.6
USP3Q9Y6I4 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
USP3Q9Y6I4 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC18.77■□□□□ 0.59
USP3Q9Y6I4 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC18.77■□□□□ 0.59
USP3Q9Y6I4 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
USP3Q9Y6I4 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
USP3Q9Y6I4 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
USP3Q9Y6I4 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
USP3Q9Y6I4 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC18.76■□□□□ 0.59
USP3Q9Y6I4 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC18.76■□□□□ 0.59
USP3Q9Y6I4 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
USP3Q9Y6I4 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
USP3Q9Y6I4 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC18.76■□□□□ 0.59
USP3Q9Y6I4 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
USP3Q9Y6I4 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
USP3Q9Y6I4 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC18.76■□□□□ 0.59
USP3Q9Y6I4 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC18.76■□□□□ 0.59
USP3Q9Y6I4 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
USP3Q9Y6I4 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
USP3Q9Y6I4 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
USP3Q9Y6I4 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
USP3Q9Y6I4 KRT18P31-201ENST00000506277 1292 ntBASIC18.76■□□□□ 0.59
USP3Q9Y6I4 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
USP3Q9Y6I4 ZNF772-206ENST00000600175 737 ntTSL 2 BASIC18.76■□□□□ 0.59
USP3Q9Y6I4 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
USP3Q9Y6I4 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC18.76■□□□□ 0.59
USP3Q9Y6I4 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC18.76■□□□□ 0.59
USP3Q9Y6I4 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
USP3Q9Y6I4 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC18.76■□□□□ 0.59
USP3Q9Y6I4 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
USP3Q9Y6I4 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
USP3Q9Y6I4 CD14-201ENST00000302014 1886 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
USP3Q9Y6I4 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
USP3Q9Y6I4 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC18.75■□□□□ 0.59
USP3Q9Y6I4 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC18.75■□□□□ 0.59
USP3Q9Y6I4 AL133373.2-201ENST00000623187 2828 ntBASIC18.75■□□□□ 0.59
USP3Q9Y6I4 AC068880.1-201ENST00000507289 2297 ntBASIC18.75■□□□□ 0.59
USP3Q9Y6I4 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC18.75■□□□□ 0.59
USP3Q9Y6I4 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
USP3Q9Y6I4 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
USP3Q9Y6I4 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC18.75■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 26 ms