Protein–RNA interactions for Protein: Q9Y5E6

PCDHB3, Protocadherin beta-3, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHB3Q9Y5E6 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC17.65■□□□□ 0.42
PCDHB3Q9Y5E6 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
PCDHB3Q9Y5E6 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC17.65■□□□□ 0.42
PCDHB3Q9Y5E6 MAN2A1-201ENST00000261483 4667 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
PCDHB3Q9Y5E6 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
PCDHB3Q9Y5E6 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC17.65■□□□□ 0.42
PCDHB3Q9Y5E6 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC17.65■□□□□ 0.42
PCDHB3Q9Y5E6 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
PCDHB3Q9Y5E6 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
PCDHB3Q9Y5E6 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
PCDHB3Q9Y5E6 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC17.64■□□□□ 0.42
PCDHB3Q9Y5E6 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC17.64■□□□□ 0.42
PCDHB3Q9Y5E6 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC17.64■□□□□ 0.42
PCDHB3Q9Y5E6 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC17.64■□□□□ 0.42
PCDHB3Q9Y5E6 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC17.64■□□□□ 0.42
PCDHB3Q9Y5E6 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC17.64■□□□□ 0.42
PCDHB3Q9Y5E6 AC112777.1-201ENST00000540175 1423 ntBASIC17.64■□□□□ 0.42
PCDHB3Q9Y5E6 AC134043.2-201ENST00000624206 2238 ntBASIC17.64■□□□□ 0.42
PCDHB3Q9Y5E6 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
PCDHB3Q9Y5E6 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
PCDHB3Q9Y5E6 NOMO2-212ENST00000622306 4252 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
PCDHB3Q9Y5E6 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC17.64■□□□□ 0.41
PCDHB3Q9Y5E6 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
PCDHB3Q9Y5E6 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC17.64■□□□□ 0.41
PCDHB3Q9Y5E6 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
PCDHB3Q9Y5E6 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
PCDHB3Q9Y5E6 PRR29-207ENST00000580752 458 ntTSL 3 BASIC17.64■□□□□ 0.41
PCDHB3Q9Y5E6 SPEG-225ENST00000617028 815 ntTSL 5 BASIC17.64■□□□□ 0.41
PCDHB3Q9Y5E6 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC17.64■□□□□ 0.41
PCDHB3Q9Y5E6 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
PCDHB3Q9Y5E6 TOR3A-203ENST00000367627 2724 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
PCDHB3Q9Y5E6 ARL5A-201ENST00000295087 5326 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
PCDHB3Q9Y5E6 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC17.64■□□□□ 0.41
PCDHB3Q9Y5E6 AC093677.2-201ENST00000600169 1863 ntBASIC17.64■□□□□ 0.41
PCDHB3Q9Y5E6 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC17.64■□□□□ 0.41
PCDHB3Q9Y5E6 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
PCDHB3Q9Y5E6 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC17.64■□□□□ 0.41
PCDHB3Q9Y5E6 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC17.64■□□□□ 0.41
PCDHB3Q9Y5E6 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
PCDHB3Q9Y5E6 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
PCDHB3Q9Y5E6 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
PCDHB3Q9Y5E6 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC17.64■□□□□ 0.41
PCDHB3Q9Y5E6 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
PCDHB3Q9Y5E6 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC17.64■□□□□ 0.41
PCDHB3Q9Y5E6 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC17.64■□□□□ 0.41
PCDHB3Q9Y5E6 AL391807.1-203ENST00000604392 2365 ntBASIC17.64■□□□□ 0.41
PCDHB3Q9Y5E6 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
PCDHB3Q9Y5E6 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
PCDHB3Q9Y5E6 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC17.63■□□□□ 0.41
PCDHB3Q9Y5E6 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC17.63■□□□□ 0.41
PCDHB3Q9Y5E6 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC17.63■□□□□ 0.41
PCDHB3Q9Y5E6 LTBP1-203ENST00000404816 6333 ntAPPRIS P4 TSL 5 BASIC17.63■□□□□ 0.41
PCDHB3Q9Y5E6 AC090340.1-201ENST00000620778 4980 ntBASIC17.63■□□□□ 0.41
PCDHB3Q9Y5E6 TLE3-214ENST00000558939 6004 ntAPPRIS P4 TSL 1 (best) BASIC17.63■□□□□ 0.41
PCDHB3Q9Y5E6 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC17.63■□□□□ 0.41
PCDHB3Q9Y5E6 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
PCDHB3Q9Y5E6 EVPL-202ENST00000586740 6223 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
PCDHB3Q9Y5E6 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
PCDHB3Q9Y5E6 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC17.63■□□□□ 0.41
PCDHB3Q9Y5E6 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
PCDHB3Q9Y5E6 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
PCDHB3Q9Y5E6 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
PCDHB3Q9Y5E6 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC17.63■□□□□ 0.41
PCDHB3Q9Y5E6 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC17.63■□□□□ 0.41
PCDHB3Q9Y5E6 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
PCDHB3Q9Y5E6 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC17.63■□□□□ 0.41
PCDHB3Q9Y5E6 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC17.63■□□□□ 0.41
PCDHB3Q9Y5E6 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC17.63■□□□□ 0.41
PCDHB3Q9Y5E6 AC011498.5-201ENST00000592027 486 ntBASIC17.63■□□□□ 0.41
PCDHB3Q9Y5E6 AC092119.3-201ENST00000612618 583 ntBASIC17.63■□□□□ 0.41
PCDHB3Q9Y5E6 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC17.63■□□□□ 0.41
PCDHB3Q9Y5E6 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
PCDHB3Q9Y5E6 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
PCDHB3Q9Y5E6 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
PCDHB3Q9Y5E6 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
PCDHB3Q9Y5E6 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC17.63■□□□□ 0.41
PCDHB3Q9Y5E6 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC17.63■□□□□ 0.41
PCDHB3Q9Y5E6 CACNA1A-227ENST00000636549 6792 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
PCDHB3Q9Y5E6 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC17.63■□□□□ 0.41
PCDHB3Q9Y5E6 THEG-201ENST00000342640 1877 ntAPPRIS P4 TSL 1 (best) BASIC17.63■□□□□ 0.41
PCDHB3Q9Y5E6 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC17.63■□□□□ 0.41
PCDHB3Q9Y5E6 PLCG1-202ENST00000373271 7395 ntAPPRIS ALT1 TSL 1 (best) BASIC17.63■□□□□ 0.41
PCDHB3Q9Y5E6 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
PCDHB3Q9Y5E6 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
PCDHB3Q9Y5E6 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC17.62■□□□□ 0.41
PCDHB3Q9Y5E6 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
PCDHB3Q9Y5E6 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC17.62■□□□□ 0.41
PCDHB3Q9Y5E6 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC17.62■□□□□ 0.41
PCDHB3Q9Y5E6 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
PCDHB3Q9Y5E6 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
PCDHB3Q9Y5E6 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
PCDHB3Q9Y5E6 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
PCDHB3Q9Y5E6 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
PCDHB3Q9Y5E6 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
PCDHB3Q9Y5E6 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
PCDHB3Q9Y5E6 DHRS4-203ENST00000397075 727 ntTSL 2 BASIC17.62■□□□□ 0.41
PCDHB3Q9Y5E6 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC17.62■□□□□ 0.41
PCDHB3Q9Y5E6 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC17.62■□□□□ 0.41
PCDHB3Q9Y5E6 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC17.62■□□□□ 0.41
PCDHB3Q9Y5E6 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC17.62■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 39.3 ms