Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 AKAP12-201ENST00000253332 6597 ntAPPRIS P4 TSL 1 (best) BASIC15.53■□□□□ 0.08
CHMP1AQ9HD42 SMARCA4-201ENST00000344626 5392 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
CHMP1AQ9HD42 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC15.53■□□□□ 0.08
CHMP1AQ9HD42 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC15.53■□□□□ 0.08
CHMP1AQ9HD42 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
CHMP1AQ9HD42 DNAJC10-210ENST00000616986 5783 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
CHMP1AQ9HD42 COLGALT2-201ENST00000361927 5177 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
CHMP1AQ9HD42 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC15.53■□□□□ 0.08
CHMP1AQ9HD42 CROCC-201ENST00000375541 6656 ntAPPRIS P1 TSL 5 BASIC15.53■□□□□ 0.08
CHMP1AQ9HD42 CHST3-201ENST00000373115 6970 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
CHMP1AQ9HD42 FRMPD4-201ENST00000380682 8465 ntAPPRIS P2 TSL 1 (best) BASIC15.53■□□□□ 0.08
CHMP1AQ9HD42 ACOT8-201ENST00000217455 1168 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
CHMP1AQ9HD42 SBSPON-201ENST00000297354 3801 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
CHMP1AQ9HD42 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
CHMP1AQ9HD42 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
CHMP1AQ9HD42 MCCD1P1-208ENST00000445732 328 ntBASIC15.53■□□□□ 0.08
CHMP1AQ9HD42 B3GAT3P1-201ENST00000471720 806 ntBASIC15.53■□□□□ 0.08
CHMP1AQ9HD42 RPPH1-201ENST00000516869 333 ntBASIC15.53■□□□□ 0.08
CHMP1AQ9HD42 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC15.53■□□□□ 0.08
CHMP1AQ9HD42 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC15.53■□□□□ 0.08
CHMP1AQ9HD42 RARRES2P10-201ENST00000564312 460 ntBASIC15.53■□□□□ 0.08
CHMP1AQ9HD42 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC15.53■□□□□ 0.08
CHMP1AQ9HD42 OBSL1-201ENST00000289656 2274 ntTSL 5 BASIC15.53■□□□□ 0.08
CHMP1AQ9HD42 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC15.53■□□□□ 0.08
CHMP1AQ9HD42 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
CHMP1AQ9HD42 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
CHMP1AQ9HD42 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
CHMP1AQ9HD42 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC15.53■□□□□ 0.08
CHMP1AQ9HD42 MAP4K3-202ENST00000341681 4271 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
CHMP1AQ9HD42 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC15.53■□□□□ 0.08
CHMP1AQ9HD42 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC15.53■□□□□ 0.08
CHMP1AQ9HD42 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC15.53■□□□□ 0.08
CHMP1AQ9HD42 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC15.53■□□□□ 0.08
CHMP1AQ9HD42 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
CHMP1AQ9HD42 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC15.53■□□□□ 0.08
CHMP1AQ9HD42 GALE-201ENST00000374497 1488 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
CHMP1AQ9HD42 FSCN1P1-201ENST00000568912 1481 ntBASIC15.52■□□□□ 0.08
CHMP1AQ9HD42 PTPN13-204ENST00000436978 8573 ntAPPRIS P4 TSL 5 BASIC15.52■□□□□ 0.08
CHMP1AQ9HD42 KRT15-201ENST00000254043 5237 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
CHMP1AQ9HD42 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC15.52■□□□□ 0.08
CHMP1AQ9HD42 CPEB2-209ENST00000538197 6878 ntAPPRIS P4 TSL 5 BASIC15.52■□□□□ 0.08
CHMP1AQ9HD42 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
CHMP1AQ9HD42 ZNF584-209ENST00000599238 2288 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
CHMP1AQ9HD42 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
CHMP1AQ9HD42 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC15.52■□□□□ 0.08
CHMP1AQ9HD42 AC138028.4-201ENST00000564984 1845 ntBASIC15.52■□□□□ 0.08
CHMP1AQ9HD42 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC15.52■□□□□ 0.08
CHMP1AQ9HD42 AC006064.2-201ENST00000501075 2196 ntTSL 2 BASIC15.52■□□□□ 0.08
CHMP1AQ9HD42 HMGXB3-202ENST00000503427 5275 ntAPPRIS ALT2 TSL 5 BASIC15.52■□□□□ 0.08
CHMP1AQ9HD42 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC15.52■□□□□ 0.08
CHMP1AQ9HD42 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC15.52■□□□□ 0.08
CHMP1AQ9HD42 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC15.52■□□□□ 0.08
CHMP1AQ9HD42 AL645608.8-201ENST00000606034 2086 ntBASIC15.52■□□□□ 0.08
CHMP1AQ9HD42 WASHC2C-204ENST00000374362 4623 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.08
CHMP1AQ9HD42 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
CHMP1AQ9HD42 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC15.52■□□□□ 0.08
CHMP1AQ9HD42 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
CHMP1AQ9HD42 AP000593.1-201ENST00000393668 712 ntBASIC15.52■□□□□ 0.08
CHMP1AQ9HD42 AC011506.1-201ENST00000474329 610 ntBASIC15.52■□□□□ 0.08
CHMP1AQ9HD42 CD99P1-205ENST00000527459 561 ntBASIC15.52■□□□□ 0.08
CHMP1AQ9HD42 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC15.52■□□□□ 0.08
CHMP1AQ9HD42 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC15.52■□□□□ 0.08
CHMP1AQ9HD42 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC15.52■□□□□ 0.08
CHMP1AQ9HD42 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
CHMP1AQ9HD42 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.07
CHMP1AQ9HD42 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC15.52■□□□□ 0.07
CHMP1AQ9HD42 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC15.52■□□□□ 0.07
CHMP1AQ9HD42 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC15.52■□□□□ 0.07
CHMP1AQ9HD42 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
CHMP1AQ9HD42 CBSL-202ENST00000617706 2563 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
CHMP1AQ9HD42 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC15.52■□□□□ 0.07
CHMP1AQ9HD42 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
CHMP1AQ9HD42 TPBG-203ENST00000543496 2881 ntAPPRIS P1 TSL 2 BASIC15.52■□□□□ 0.07
CHMP1AQ9HD42 ALK-201ENST00000389048 6220 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
CHMP1AQ9HD42 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC15.52■□□□□ 0.07
CHMP1AQ9HD42 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
CHMP1AQ9HD42 PILRB-208ENST00000452089 2099 ntAPPRIS P2 TSL 2 BASIC15.52■□□□□ 0.07
CHMP1AQ9HD42 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
CHMP1AQ9HD42 FAM129B-201ENST00000373312 3957 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
CHMP1AQ9HD42 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
CHMP1AQ9HD42 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC15.51■□□□□ 0.07
CHMP1AQ9HD42 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
CHMP1AQ9HD42 ARHGAP44-202ENST00000340825 4211 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
CHMP1AQ9HD42 ARHGAP44-203ENST00000379672 4228 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
CHMP1AQ9HD42 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC15.51■□□□□ 0.07
CHMP1AQ9HD42 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC15.51■□□□□ 0.07
CHMP1AQ9HD42 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
CHMP1AQ9HD42 CRTC3-202ENST00000420329 5209 ntAPPRIS ALT1 TSL 2 BASIC15.51■□□□□ 0.07
CHMP1AQ9HD42 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC15.51■□□□□ 0.07
CHMP1AQ9HD42 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC15.51■□□□□ 0.07
CHMP1AQ9HD42 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
CHMP1AQ9HD42 AC080080.1-201ENST00000625121 2420 ntBASIC15.51■□□□□ 0.07
CHMP1AQ9HD42 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
CHMP1AQ9HD42 SNCG-201ENST00000348795 684 ntTSL 2 BASIC15.51■□□□□ 0.07
CHMP1AQ9HD42 STK24-AS1-201ENST00000434547 1278 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
CHMP1AQ9HD42 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC15.51■□□□□ 0.07
CHMP1AQ9HD42 RNF121-214ENST00000533380 870 ntTSL 3 BASIC15.51■□□□□ 0.07
CHMP1AQ9HD42 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC15.51■□□□□ 0.07
CHMP1AQ9HD42 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC15.51■□□□□ 0.07
CHMP1AQ9HD42 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC15.51■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 50.6 ms