Protein–RNA interactions for Protein: Q96SZ6

CDK5RAP1, CDK5 regulatory subunit-associated protein 1, humanhuman

Known RBP Predictions only

Length 601 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDK5RAP1Q96SZ6 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
CDK5RAP1Q96SZ6 IGHV3OR16-7-201ENST00000604106 360 ntBASIC18.64■□□□□ 0.57
CDK5RAP1Q96SZ6 AC011247.3-202ENST00000605062 570 ntTSL 4 BASIC18.64■□□□□ 0.57
CDK5RAP1Q96SZ6 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
CDK5RAP1Q96SZ6 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CDK5RAP1Q96SZ6 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CDK5RAP1Q96SZ6 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
CDK5RAP1Q96SZ6 DPYSL3-202ENST00000398514 5309 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CDK5RAP1Q96SZ6 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CDK5RAP1Q96SZ6 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC18.64■□□□□ 0.57
CDK5RAP1Q96SZ6 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC18.64■□□□□ 0.57
CDK5RAP1Q96SZ6 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
CDK5RAP1Q96SZ6 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CDK5RAP1Q96SZ6 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
CDK5RAP1Q96SZ6 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC18.63■□□□□ 0.57
CDK5RAP1Q96SZ6 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC18.63■□□□□ 0.57
CDK5RAP1Q96SZ6 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CDK5RAP1Q96SZ6 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC18.63■□□□□ 0.57
CDK5RAP1Q96SZ6 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
CDK5RAP1Q96SZ6 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC18.63■□□□□ 0.57
CDK5RAP1Q96SZ6 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
CDK5RAP1Q96SZ6 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
CDK5RAP1Q96SZ6 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CDK5RAP1Q96SZ6 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CDK5RAP1Q96SZ6 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC18.63■□□□□ 0.57
CDK5RAP1Q96SZ6 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC18.63■□□□□ 0.57
CDK5RAP1Q96SZ6 CHCHD1-201ENST00000372833 835 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CDK5RAP1Q96SZ6 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
CDK5RAP1Q96SZ6 C2orf82-202ENST00000409230 663 ntAPPRIS P2 TSL 3 BASIC18.63■□□□□ 0.57
CDK5RAP1Q96SZ6 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
CDK5RAP1Q96SZ6 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC18.63■□□□□ 0.57
CDK5RAP1Q96SZ6 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CDK5RAP1Q96SZ6 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
CDK5RAP1Q96SZ6 ACP6-203ENST00000487562 1258 ntTSL 5 BASIC18.63■□□□□ 0.57
CDK5RAP1Q96SZ6 AC064807.1-201ENST00000518942 816 ntTSL 3 BASIC18.63■□□□□ 0.57
CDK5RAP1Q96SZ6 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC18.63■□□□□ 0.57
CDK5RAP1Q96SZ6 RAB34-226ENST00000636772 1180 ntTSL 5 BASIC18.63■□□□□ 0.57
CDK5RAP1Q96SZ6 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CDK5RAP1Q96SZ6 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
CDK5RAP1Q96SZ6 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC18.63■□□□□ 0.57
CDK5RAP1Q96SZ6 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC18.63■□□□□ 0.57
CDK5RAP1Q96SZ6 IMPAD1-201ENST00000262644 7199 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CDK5RAP1Q96SZ6 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
CDK5RAP1Q96SZ6 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC18.63■□□□□ 0.57
CDK5RAP1Q96SZ6 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC18.63■□□□□ 0.57
CDK5RAP1Q96SZ6 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CDK5RAP1Q96SZ6 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
CDK5RAP1Q96SZ6 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC18.63■□□□□ 0.57
CDK5RAP1Q96SZ6 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
CDK5RAP1Q96SZ6 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
CDK5RAP1Q96SZ6 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC18.63■□□□□ 0.57
CDK5RAP1Q96SZ6 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
CDK5RAP1Q96SZ6 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CDK5RAP1Q96SZ6 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CDK5RAP1Q96SZ6 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CDK5RAP1Q96SZ6 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
CDK5RAP1Q96SZ6 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
CDK5RAP1Q96SZ6 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
CDK5RAP1Q96SZ6 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CDK5RAP1Q96SZ6 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CDK5RAP1Q96SZ6 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
CDK5RAP1Q96SZ6 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CDK5RAP1Q96SZ6 CHST11-201ENST00000303694 5709 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
CDK5RAP1Q96SZ6 CD9-202ENST00000382515 1229 ntTSL 5 BASIC18.62■□□□□ 0.57
CDK5RAP1Q96SZ6 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CDK5RAP1Q96SZ6 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC18.62■□□□□ 0.57
CDK5RAP1Q96SZ6 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC18.62■□□□□ 0.57
CDK5RAP1Q96SZ6 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC18.62■□□□□ 0.57
CDK5RAP1Q96SZ6 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC18.62■□□□□ 0.57
CDK5RAP1Q96SZ6 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CDK5RAP1Q96SZ6 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
CDK5RAP1Q96SZ6 MAIP1-202ENST00000392290 1386 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
CDK5RAP1Q96SZ6 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC18.62■□□□□ 0.57
CDK5RAP1Q96SZ6 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC18.62■□□□□ 0.57
CDK5RAP1Q96SZ6 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
CDK5RAP1Q96SZ6 EFTUD1P1-204ENST00000560401 1798 ntBASIC18.62■□□□□ 0.57
CDK5RAP1Q96SZ6 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CDK5RAP1Q96SZ6 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CDK5RAP1Q96SZ6 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CDK5RAP1Q96SZ6 SPOPL-201ENST00000280098 6025 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CDK5RAP1Q96SZ6 ANKRD9-201ENST00000286918 6727 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CDK5RAP1Q96SZ6 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC18.62■□□□□ 0.57
CDK5RAP1Q96SZ6 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CDK5RAP1Q96SZ6 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CDK5RAP1Q96SZ6 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC18.62■□□□□ 0.57
CDK5RAP1Q96SZ6 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CDK5RAP1Q96SZ6 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
CDK5RAP1Q96SZ6 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CDK5RAP1Q96SZ6 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
CDK5RAP1Q96SZ6 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC18.62■□□□□ 0.57
CDK5RAP1Q96SZ6 ADARB1-201ENST00000348831 6882 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CDK5RAP1Q96SZ6 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
CDK5RAP1Q96SZ6 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CDK5RAP1Q96SZ6 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
CDK5RAP1Q96SZ6 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC18.61■□□□□ 0.57
CDK5RAP1Q96SZ6 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CDK5RAP1Q96SZ6 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CDK5RAP1Q96SZ6 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC18.61■□□□□ 0.57
CDK5RAP1Q96SZ6 MADD-208ENST00000405573 1823 ntTSL 5 BASIC18.61■□□□□ 0.57
CDK5RAP1Q96SZ6 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC18.61■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 39.9 ms