Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
LMX1AQ8TE12 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
LMX1AQ8TE12 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
LMX1AQ8TE12 AL356309.3-201ENST00000624132 1934 ntBASIC17.49■□□□□ 0.39
LMX1AQ8TE12 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC17.49■□□□□ 0.39
LMX1AQ8TE12 NADK2-206ENST00000506945 1437 ntTSL 2 BASIC17.49■□□□□ 0.39
LMX1AQ8TE12 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC17.49■□□□□ 0.39
LMX1AQ8TE12 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
LMX1AQ8TE12 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
LMX1AQ8TE12 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
LMX1AQ8TE12 ERLIN1-203ENST00000421367 5792 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
LMX1AQ8TE12 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC17.49■□□□□ 0.39
LMX1AQ8TE12 MIR574-201ENST00000385209 96 ntBASIC17.49■□□□□ 0.39
LMX1AQ8TE12 FAM220CP-201ENST00000395253 831 ntBASIC17.49■□□□□ 0.39
LMX1AQ8TE12 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC17.49■□□□□ 0.39
LMX1AQ8TE12 PMS2P1-201ENST00000431037 1228 ntBASIC17.49■□□□□ 0.39
LMX1AQ8TE12 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC17.49■□□□□ 0.39
LMX1AQ8TE12 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC17.49■□□□□ 0.39
LMX1AQ8TE12 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
LMX1AQ8TE12 AC021087.4-201ENST00000563761 564 ntBASIC17.49■□□□□ 0.39
LMX1AQ8TE12 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC17.49■□□□□ 0.39
LMX1AQ8TE12 AC104532.1-201ENST00000588891 580 ntAPPRIS P1 TSL 4 BASIC17.49■□□□□ 0.39
LMX1AQ8TE12 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
LMX1AQ8TE12 SHE-201ENST00000304760 6243 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
LMX1AQ8TE12 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
LMX1AQ8TE12 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC17.49■□□□□ 0.39
LMX1AQ8TE12 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
LMX1AQ8TE12 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC17.49■□□□□ 0.39
LMX1AQ8TE12 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
LMX1AQ8TE12 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC17.49■□□□□ 0.39
LMX1AQ8TE12 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
LMX1AQ8TE12 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC17.48■□□□□ 0.39
LMX1AQ8TE12 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
LMX1AQ8TE12 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC17.48■□□□□ 0.39
LMX1AQ8TE12 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
LMX1AQ8TE12 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC17.48■□□□□ 0.39
LMX1AQ8TE12 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
LMX1AQ8TE12 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
LMX1AQ8TE12 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC17.48■□□□□ 0.39
LMX1AQ8TE12 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC17.48■□□□□ 0.39
LMX1AQ8TE12 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC17.48■□□□□ 0.39
LMX1AQ8TE12 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
LMX1AQ8TE12 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
LMX1AQ8TE12 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC17.48■□□□□ 0.39
LMX1AQ8TE12 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC17.48■□□□□ 0.39
LMX1AQ8TE12 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC17.48■□□□□ 0.39
LMX1AQ8TE12 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
LMX1AQ8TE12 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC17.48■□□□□ 0.39
LMX1AQ8TE12 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC17.48■□□□□ 0.39
LMX1AQ8TE12 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC17.48■□□□□ 0.39
LMX1AQ8TE12 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC17.48■□□□□ 0.39
LMX1AQ8TE12 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
LMX1AQ8TE12 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC17.48■□□□□ 0.39
LMX1AQ8TE12 ARHGAP26-201ENST00000274498 6862 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
LMX1AQ8TE12 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC17.48■□□□□ 0.39
LMX1AQ8TE12 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
LMX1AQ8TE12 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
LMX1AQ8TE12 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
LMX1AQ8TE12 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC17.48■□□□□ 0.39
LMX1AQ8TE12 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC17.48■□□□□ 0.39
LMX1AQ8TE12 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
LMX1AQ8TE12 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
LMX1AQ8TE12 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
LMX1AQ8TE12 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC17.47■□□□□ 0.39
LMX1AQ8TE12 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC17.47■□□□□ 0.39
LMX1AQ8TE12 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
LMX1AQ8TE12 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC17.47■□□□□ 0.39
LMX1AQ8TE12 CTNS-203ENST00000399306 803 ntTSL 3 BASIC17.47■□□□□ 0.39
LMX1AQ8TE12 RPS2P1-201ENST00000434010 821 ntBASIC17.47■□□□□ 0.39
LMX1AQ8TE12 AC007967.3-201ENST00000434308 558 ntBASIC17.47■□□□□ 0.39
LMX1AQ8TE12 AP000688.4-201ENST00000436303 446 ntTSL 3 BASIC17.47■□□□□ 0.39
LMX1AQ8TE12 SRP19-202ENST00000445150 833 ntTSL 2 BASIC17.47■□□□□ 0.39
LMX1AQ8TE12 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
LMX1AQ8TE12 RPL13AP23-201ENST00000480739 586 ntBASIC17.47■□□□□ 0.39
LMX1AQ8TE12 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC17.47■□□□□ 0.39
LMX1AQ8TE12 PAM16-208ENST00000573553 722 ntTSL 2 BASIC17.47■□□□□ 0.39
LMX1AQ8TE12 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC17.47■□□□□ 0.39
LMX1AQ8TE12 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC17.47■□□□□ 0.39
LMX1AQ8TE12 GPALPP1-207ENST00000611650 899 ntBASIC17.47■□□□□ 0.39
LMX1AQ8TE12 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
LMX1AQ8TE12 AC116407.3-201ENST00000623905 1129 ntBASIC17.47■□□□□ 0.39
LMX1AQ8TE12 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC17.47■□□□□ 0.39
LMX1AQ8TE12 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
LMX1AQ8TE12 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC17.47■□□□□ 0.39
LMX1AQ8TE12 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
LMX1AQ8TE12 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
LMX1AQ8TE12 DOC2B-203ENST00000613549 6048 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
LMX1AQ8TE12 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC17.47■□□□□ 0.39
LMX1AQ8TE12 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
LMX1AQ8TE12 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
LMX1AQ8TE12 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
LMX1AQ8TE12 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
LMX1AQ8TE12 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC17.47■□□□□ 0.39
LMX1AQ8TE12 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
LMX1AQ8TE12 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
LMX1AQ8TE12 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC17.47■□□□□ 0.39
LMX1AQ8TE12 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC17.46■□□□□ 0.39
LMX1AQ8TE12 EIF5-201ENST00000216554 5945 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
LMX1AQ8TE12 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC17.46■□□□□ 0.39
LMX1AQ8TE12 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 46.9 ms