Protein–RNA interactions for Protein: Q7Z3B4

NUP54, Nucleoporin p54, humanhuman

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54Q7Z3B4 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
NUP54Q7Z3B4 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
NUP54Q7Z3B4 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
NUP54Q7Z3B4 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC16.66■□□□□ 0.26
NUP54Q7Z3B4 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC16.66■□□□□ 0.26
NUP54Q7Z3B4 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
NUP54Q7Z3B4 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
NUP54Q7Z3B4 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC16.66■□□□□ 0.26
NUP54Q7Z3B4 AC140504.1-202ENST00000568222 652 ntTSL 5 BASIC16.66■□□□□ 0.26
NUP54Q7Z3B4 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC16.66■□□□□ 0.26
NUP54Q7Z3B4 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
NUP54Q7Z3B4 RABAC1-208ENST00000601078 728 ntTSL 3 BASIC16.66■□□□□ 0.26
NUP54Q7Z3B4 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC16.66■□□□□ 0.26
NUP54Q7Z3B4 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC16.66■□□□□ 0.26
NUP54Q7Z3B4 VPS72-207ENST00000640458 689 ntTSL 5 BASIC16.66■□□□□ 0.26
NUP54Q7Z3B4 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC16.66■□□□□ 0.26
NUP54Q7Z3B4 NARF-204ENST00000390006 1766 ntTSL 2 BASIC16.66■□□□□ 0.26
NUP54Q7Z3B4 PHGDH-209ENST00000641074 1780 ntBASIC16.66■□□□□ 0.26
NUP54Q7Z3B4 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC16.66■□□□□ 0.26
NUP54Q7Z3B4 FARP1-242ENST00000627049 5103 ntTSL 5 BASIC16.66■□□□□ 0.26
NUP54Q7Z3B4 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
NUP54Q7Z3B4 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
NUP54Q7Z3B4 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC16.65■□□□□ 0.26
NUP54Q7Z3B4 RRAGD-202ENST00000369415 4900 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
NUP54Q7Z3B4 CACNA1I-201ENST00000401624 6740 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
NUP54Q7Z3B4 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC16.65■□□□□ 0.26
NUP54Q7Z3B4 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
NUP54Q7Z3B4 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC16.65■□□□□ 0.26
NUP54Q7Z3B4 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
NUP54Q7Z3B4 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
NUP54Q7Z3B4 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC16.65■□□□□ 0.26
NUP54Q7Z3B4 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC16.65■□□□□ 0.26
NUP54Q7Z3B4 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
NUP54Q7Z3B4 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC16.65■□□□□ 0.26
NUP54Q7Z3B4 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC16.65■□□□□ 0.26
NUP54Q7Z3B4 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC16.65■□□□□ 0.26
NUP54Q7Z3B4 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
NUP54Q7Z3B4 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC16.65■□□□□ 0.26
NUP54Q7Z3B4 AC090616.6-201ENST00000582640 721 ntBASIC16.65■□□□□ 0.26
NUP54Q7Z3B4 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
NUP54Q7Z3B4 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC16.65■□□□□ 0.26
NUP54Q7Z3B4 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC16.65■□□□□ 0.26
NUP54Q7Z3B4 ANKRD20A8P-203ENST00000641373 517 ntBASIC16.65■□□□□ 0.26
NUP54Q7Z3B4 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC16.65■□□□□ 0.26
NUP54Q7Z3B4 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
NUP54Q7Z3B4 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
NUP54Q7Z3B4 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC16.65■□□□□ 0.26
NUP54Q7Z3B4 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
NUP54Q7Z3B4 UBC-206ENST00000538617 1303 ntTSL 5 BASIC16.65■□□□□ 0.26
NUP54Q7Z3B4 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
NUP54Q7Z3B4 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
NUP54Q7Z3B4 MYOG-201ENST00000241651 1528 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
NUP54Q7Z3B4 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
NUP54Q7Z3B4 MARCH1-203ENST00000503008 5877 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
NUP54Q7Z3B4 BACE1-201ENST00000313005 6326 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.26
NUP54Q7Z3B4 AC135776.1-201ENST00000319817 2481 ntBASIC16.64■□□□□ 0.26
NUP54Q7Z3B4 NOC2LP2-201ENST00000407594 1944 ntBASIC16.64■□□□□ 0.26
NUP54Q7Z3B4 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.26
NUP54Q7Z3B4 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
NUP54Q7Z3B4 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
NUP54Q7Z3B4 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
NUP54Q7Z3B4 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
NUP54Q7Z3B4 SCRIB-203ENST00000377533 5108 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
NUP54Q7Z3B4 DDHD1-201ENST00000323669 5503 ntTSL 2 BASIC16.64■□□□□ 0.25
NUP54Q7Z3B4 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
NUP54Q7Z3B4 UBE2C-204ENST00000356455 850 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
NUP54Q7Z3B4 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
NUP54Q7Z3B4 TSPY12P-201ENST00000421279 868 ntBASIC16.64■□□□□ 0.25
NUP54Q7Z3B4 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC16.64■□□□□ 0.25
NUP54Q7Z3B4 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
NUP54Q7Z3B4 GUSBP12-201ENST00000513727 720 ntBASIC16.64■□□□□ 0.25
NUP54Q7Z3B4 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC16.64■□□□□ 0.25
NUP54Q7Z3B4 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC16.64■□□□□ 0.25
NUP54Q7Z3B4 AC069148.1-201ENST00000608741 768 ntBASIC16.64■□□□□ 0.25
NUP54Q7Z3B4 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC16.64■□□□□ 0.25
NUP54Q7Z3B4 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
NUP54Q7Z3B4 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
NUP54Q7Z3B4 POR-209ENST00000439269 1858 ntTSL 2 BASIC16.64■□□□□ 0.25
NUP54Q7Z3B4 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC16.64■□□□□ 0.25
NUP54Q7Z3B4 LRRC58-201ENST00000295628 7903 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
NUP54Q7Z3B4 ADGRB2-212ENST00000527361 4919 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
NUP54Q7Z3B4 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
NUP54Q7Z3B4 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
NUP54Q7Z3B4 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
NUP54Q7Z3B4 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC16.64■□□□□ 0.25
NUP54Q7Z3B4 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
NUP54Q7Z3B4 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
NUP54Q7Z3B4 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
NUP54Q7Z3B4 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC16.64■□□□□ 0.25
NUP54Q7Z3B4 AC016734.2-201ENST00000624325 1377 ntBASIC16.64■□□□□ 0.25
NUP54Q7Z3B4 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
NUP54Q7Z3B4 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
NUP54Q7Z3B4 TSC2-201ENST00000219476 6156 ntAPPRIS P3 TSL 5 BASIC16.63■□□□□ 0.25
NUP54Q7Z3B4 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
NUP54Q7Z3B4 AC093010.1-201ENST00000473625 1624 ntBASIC16.63■□□□□ 0.25
NUP54Q7Z3B4 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC16.63■□□□□ 0.25
NUP54Q7Z3B4 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
NUP54Q7Z3B4 CLYBL-203ENST00000376355 6771 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
NUP54Q7Z3B4 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC16.63■□□□□ 0.25
NUP54Q7Z3B4 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC16.63■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 36.7 ms