Protein–RNA interactions for Protein: Q6DD88

ATL3, Atlastin-3, humanhuman

Predictions only

Length 541 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATL3Q6DD88 ADCY3-201ENST00000260600 5050 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
ATL3Q6DD88 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
ATL3Q6DD88 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
ATL3Q6DD88 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
ATL3Q6DD88 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
ATL3Q6DD88 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
ATL3Q6DD88 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC20.55■□□□□ 0.88
ATL3Q6DD88 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC20.55■□□□□ 0.88
ATL3Q6DD88 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
ATL3Q6DD88 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC20.55■□□□□ 0.88
ATL3Q6DD88 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC20.55■□□□□ 0.88
ATL3Q6DD88 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
ATL3Q6DD88 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC20.55■□□□□ 0.88
ATL3Q6DD88 TSPY15P-201ENST00000457163 923 ntBASIC20.55■□□□□ 0.88
ATL3Q6DD88 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
ATL3Q6DD88 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC20.55■□□□□ 0.88
ATL3Q6DD88 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC20.55■□□□□ 0.88
ATL3Q6DD88 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC20.55■□□□□ 0.88
ATL3Q6DD88 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC20.55■□□□□ 0.88
ATL3Q6DD88 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC20.55■□□□□ 0.88
ATL3Q6DD88 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
ATL3Q6DD88 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC20.55■□□□□ 0.88
ATL3Q6DD88 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
ATL3Q6DD88 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC20.55■□□□□ 0.88
ATL3Q6DD88 BOC-212ENST00000485230 2173 ntTSL 2 BASIC20.55■□□□□ 0.88
ATL3Q6DD88 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
ATL3Q6DD88 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
ATL3Q6DD88 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC20.55■□□□□ 0.88
ATL3Q6DD88 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC20.54■□□□□ 0.88
ATL3Q6DD88 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
ATL3Q6DD88 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
ATL3Q6DD88 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC20.54■□□□□ 0.88
ATL3Q6DD88 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
ATL3Q6DD88 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
ATL3Q6DD88 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC20.54■□□□□ 0.88
ATL3Q6DD88 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
ATL3Q6DD88 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
ATL3Q6DD88 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
ATL3Q6DD88 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
ATL3Q6DD88 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
ATL3Q6DD88 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
ATL3Q6DD88 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC20.54■□□□□ 0.88
ATL3Q6DD88 HES2-202ENST00000377836 507 ntTSL 2 BASIC20.54■□□□□ 0.88
ATL3Q6DD88 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC20.54■□□□□ 0.88
ATL3Q6DD88 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC20.54■□□□□ 0.88
ATL3Q6DD88 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
ATL3Q6DD88 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC20.54■□□□□ 0.88
ATL3Q6DD88 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC20.54■□□□□ 0.88
ATL3Q6DD88 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
ATL3Q6DD88 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
ATL3Q6DD88 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
ATL3Q6DD88 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
ATL3Q6DD88 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC20.54■□□□□ 0.88
ATL3Q6DD88 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
ATL3Q6DD88 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC20.54■□□□□ 0.88
ATL3Q6DD88 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC20.54■□□□□ 0.88
ATL3Q6DD88 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
ATL3Q6DD88 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
ATL3Q6DD88 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
ATL3Q6DD88 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
ATL3Q6DD88 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC20.53■□□□□ 0.88
ATL3Q6DD88 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
ATL3Q6DD88 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC20.53■□□□□ 0.88
ATL3Q6DD88 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC20.53■□□□□ 0.88
ATL3Q6DD88 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC20.53■□□□□ 0.88
ATL3Q6DD88 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
ATL3Q6DD88 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
ATL3Q6DD88 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
ATL3Q6DD88 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
ATL3Q6DD88 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC20.53■□□□□ 0.88
ATL3Q6DD88 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
ATL3Q6DD88 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC20.53■□□□□ 0.88
ATL3Q6DD88 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
ATL3Q6DD88 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
ATL3Q6DD88 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC20.53■□□□□ 0.88
ATL3Q6DD88 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC20.53■□□□□ 0.88
ATL3Q6DD88 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
ATL3Q6DD88 AC034232.1-201ENST00000506026 1064 ntBASIC20.53■□□□□ 0.88
ATL3Q6DD88 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
ATL3Q6DD88 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC20.53■□□□□ 0.88
ATL3Q6DD88 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC20.53■□□□□ 0.88
ATL3Q6DD88 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
ATL3Q6DD88 CLN6-221ENST00000637494 765 ntTSL 5 BASIC20.53■□□□□ 0.88
ATL3Q6DD88 ZNF865-201ENST00000568956 4005 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
ATL3Q6DD88 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
ATL3Q6DD88 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC20.53■□□□□ 0.88
ATL3Q6DD88 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC20.53■□□□□ 0.88
ATL3Q6DD88 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC20.53■□□□□ 0.88
ATL3Q6DD88 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC20.53■□□□□ 0.88
ATL3Q6DD88 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
ATL3Q6DD88 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
ATL3Q6DD88 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC20.53■□□□□ 0.88
ATL3Q6DD88 SLC29A2-206ENST00000546034 2509 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
ATL3Q6DD88 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC20.53■□□□□ 0.88
ATL3Q6DD88 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
ATL3Q6DD88 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
ATL3Q6DD88 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
ATL3Q6DD88 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
ATL3Q6DD88 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC20.53■□□□□ 0.88
ATL3Q6DD88 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC20.53■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 51.2 ms