Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 RHOV-201ENST00000220507 1705 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
VPS53Q5VIR6 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC21.73■■□□□ 1.07
VPS53Q5VIR6 AC011498.5-201ENST00000592027 486 ntBASIC21.73■■□□□ 1.07
VPS53Q5VIR6 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC21.73■■□□□ 1.07
VPS53Q5VIR6 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
VPS53Q5VIR6 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC21.73■■□□□ 1.07
VPS53Q5VIR6 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
VPS53Q5VIR6 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
VPS53Q5VIR6 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
VPS53Q5VIR6 UBC-206ENST00000538617 1303 ntTSL 5 BASIC21.73■■□□□ 1.07
VPS53Q5VIR6 CLEC4G-201ENST00000328853 1360 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
VPS53Q5VIR6 IER3-202ENST00000376377 1350 ntBASIC21.73■■□□□ 1.07
VPS53Q5VIR6 AC093010.1-201ENST00000473625 1624 ntBASIC21.73■■□□□ 1.07
VPS53Q5VIR6 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC21.73■■□□□ 1.07
VPS53Q5VIR6 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC21.72■■□□□ 1.07
VPS53Q5VIR6 PLBD2-201ENST00000280800 4800 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
VPS53Q5VIR6 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC21.72■■□□□ 1.07
VPS53Q5VIR6 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC21.72■■□□□ 1.07
VPS53Q5VIR6 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC21.72■■□□□ 1.07
VPS53Q5VIR6 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
VPS53Q5VIR6 FLJ13224-201ENST00000313737 1514 ntBASIC21.72■■□□□ 1.07
VPS53Q5VIR6 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC21.72■■□□□ 1.07
VPS53Q5VIR6 VKORC1-205ENST00000394975 1012 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
VPS53Q5VIR6 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC21.72■■□□□ 1.07
VPS53Q5VIR6 AP000777.3-201ENST00000538705 491 ntTSL 3 BASIC21.72■■□□□ 1.07
VPS53Q5VIR6 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC21.72■■□□□ 1.07
VPS53Q5VIR6 ZNF575-205ENST00000601282 1086 ntAPPRIS P1 TSL 2 BASIC21.72■■□□□ 1.07
VPS53Q5VIR6 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC21.72■■□□□ 1.07
VPS53Q5VIR6 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC21.72■■□□□ 1.07
VPS53Q5VIR6 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC21.72■■□□□ 1.07
VPS53Q5VIR6 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
VPS53Q5VIR6 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC21.72■■□□□ 1.07
VPS53Q5VIR6 MRC2-201ENST00000303375 5988 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
VPS53Q5VIR6 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC21.72■■□□□ 1.07
VPS53Q5VIR6 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
VPS53Q5VIR6 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
VPS53Q5VIR6 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC21.72■■□□□ 1.07
VPS53Q5VIR6 VASH1-201ENST00000167106 5728 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
VPS53Q5VIR6 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
VPS53Q5VIR6 PCDHB18P-201ENST00000524813 2368 ntBASIC21.72■■□□□ 1.07
VPS53Q5VIR6 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC21.71■■□□□ 1.07
VPS53Q5VIR6 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
VPS53Q5VIR6 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC21.71■■□□□ 1.07
VPS53Q5VIR6 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
VPS53Q5VIR6 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC21.71■■□□□ 1.07
VPS53Q5VIR6 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
VPS53Q5VIR6 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
VPS53Q5VIR6 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
VPS53Q5VIR6 CACNA1A-201ENST00000360228 8627 ntAPPRIS P4 TSL 1 (best) BASIC21.71■■□□□ 1.07
VPS53Q5VIR6 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC21.71■■□□□ 1.07
VPS53Q5VIR6 HAAO-201ENST00000294973 1265 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
VPS53Q5VIR6 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC21.71■■□□□ 1.07
VPS53Q5VIR6 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC21.71■■□□□ 1.07
VPS53Q5VIR6 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC21.71■■□□□ 1.07
VPS53Q5VIR6 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC21.71■■□□□ 1.07
VPS53Q5VIR6 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC21.71■■□□□ 1.07
VPS53Q5VIR6 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC21.71■■□□□ 1.07
VPS53Q5VIR6 AR-207ENST00000612010 3896 ntTSL 5 BASIC21.71■■□□□ 1.07
VPS53Q5VIR6 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
VPS53Q5VIR6 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
VPS53Q5VIR6 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC21.71■■□□□ 1.07
VPS53Q5VIR6 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
VPS53Q5VIR6 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC21.71■■□□□ 1.07
VPS53Q5VIR6 CCDC74B-202ENST00000392984 1353 ntAPPRIS ALT2 TSL 5 BASIC21.71■■□□□ 1.07
VPS53Q5VIR6 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC21.71■■□□□ 1.07
VPS53Q5VIR6 CDC73-201ENST00000367435 4969 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.07
VPS53Q5VIR6 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC21.7■■□□□ 1.07
VPS53Q5VIR6 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.07
VPS53Q5VIR6 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC21.7■■□□□ 1.06
VPS53Q5VIR6 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC21.7■■□□□ 1.06
VPS53Q5VIR6 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC21.7■■□□□ 1.06
VPS53Q5VIR6 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC21.7■■□□□ 1.06
VPS53Q5VIR6 RABAC1-201ENST00000222008 821 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
VPS53Q5VIR6 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
VPS53Q5VIR6 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
VPS53Q5VIR6 C16orf91-201ENST00000442039 978 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
VPS53Q5VIR6 AC113404.2-201ENST00000507884 177 ntBASIC21.7■■□□□ 1.06
VPS53Q5VIR6 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC21.7■■□□□ 1.06
VPS53Q5VIR6 RABAC1-208ENST00000601078 728 ntTSL 3 BASIC21.7■■□□□ 1.06
VPS53Q5VIR6 GPR32P1-201ENST00000601788 811 ntBASIC21.7■■□□□ 1.06
VPS53Q5VIR6 AP000550.4-202ENST00000639755 178 ntBASIC21.7■■□□□ 1.06
VPS53Q5VIR6 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
VPS53Q5VIR6 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.06
VPS53Q5VIR6 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC21.7■■□□□ 1.06
VPS53Q5VIR6 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC21.7■■□□□ 1.06
VPS53Q5VIR6 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
VPS53Q5VIR6 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
VPS53Q5VIR6 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC21.7■■□□□ 1.06
VPS53Q5VIR6 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC21.7■■□□□ 1.06
VPS53Q5VIR6 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
VPS53Q5VIR6 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC21.69■■□□□ 1.06
VPS53Q5VIR6 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC21.69■■□□□ 1.06
VPS53Q5VIR6 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
VPS53Q5VIR6 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
VPS53Q5VIR6 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
VPS53Q5VIR6 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
VPS53Q5VIR6 ADCY6-202ENST00000357869 5748 ntTSL 2 BASIC21.69■■□□□ 1.06
VPS53Q5VIR6 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC21.69■■□□□ 1.06
VPS53Q5VIR6 UNKL-204ENST00000389221 5116 ntAPPRIS ALT2 TSL 5 BASIC21.69■■□□□ 1.06
VPS53Q5VIR6 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC21.69■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 44 ms