Protein–RNA interactions for Protein: Q15459

SF3A1, Splicing factor 3A subunit 1, humanhuman

Known RBP Predictions only

Length 793 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1Q15459 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
SF3A1Q15459 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC20.82■□□□□ 0.92
SF3A1Q15459 CROCCP3-201ENST00000263511 5368 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
SF3A1Q15459 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC20.82■□□□□ 0.92
SF3A1Q15459 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
SF3A1Q15459 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
SF3A1Q15459 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC20.82■□□□□ 0.92
SF3A1Q15459 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
SF3A1Q15459 KCNT1-202ENST00000371757 4717 ntAPPRIS P3 TSL 1 (best) BASIC20.82■□□□□ 0.92
SF3A1Q15459 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
SF3A1Q15459 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC20.82■□□□□ 0.92
SF3A1Q15459 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC20.81■□□□□ 0.92
SF3A1Q15459 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
SF3A1Q15459 DAPK1-202ENST00000408954 5892 ntAPPRIS P1 TSL 2 BASIC20.81■□□□□ 0.92
SF3A1Q15459 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
SF3A1Q15459 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC20.81■□□□□ 0.92
SF3A1Q15459 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC20.81■□□□□ 0.92
SF3A1Q15459 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC20.81■□□□□ 0.92
SF3A1Q15459 NOMO2-211ENST00000621364 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
SF3A1Q15459 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC20.81■□□□□ 0.92
SF3A1Q15459 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
SF3A1Q15459 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC20.81■□□□□ 0.92
SF3A1Q15459 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
SF3A1Q15459 GAD2-202ENST00000376248 680 ntTSL 5 BASIC20.81■□□□□ 0.92
SF3A1Q15459 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC20.81■□□□□ 0.92
SF3A1Q15459 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC20.81■□□□□ 0.92
SF3A1Q15459 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC20.81■□□□□ 0.92
SF3A1Q15459 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC20.81■□□□□ 0.92
SF3A1Q15459 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC20.81■□□□□ 0.92
SF3A1Q15459 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC20.81■□□□□ 0.92
SF3A1Q15459 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
SF3A1Q15459 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
SF3A1Q15459 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
SF3A1Q15459 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
SF3A1Q15459 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
SF3A1Q15459 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
SF3A1Q15459 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC20.81■□□□□ 0.92
SF3A1Q15459 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC20.8■□□□□ 0.92
SF3A1Q15459 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
SF3A1Q15459 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
SF3A1Q15459 STAMBPL1-203ENST00000371926 2532 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
SF3A1Q15459 HLA-DQB1-201ENST00000374943 1656 ntBASIC20.8■□□□□ 0.92
SF3A1Q15459 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
SF3A1Q15459 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
SF3A1Q15459 RECK-201ENST00000377966 4888 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
SF3A1Q15459 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC20.8■□□□□ 0.92
SF3A1Q15459 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC20.8■□□□□ 0.92
SF3A1Q15459 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
SF3A1Q15459 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
SF3A1Q15459 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
SF3A1Q15459 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC20.8■□□□□ 0.92
SF3A1Q15459 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC20.8■□□□□ 0.92
SF3A1Q15459 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
SF3A1Q15459 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC20.8■□□□□ 0.92
SF3A1Q15459 TMA16-209ENST00000513272 803 ntTSL 2 BASIC20.8■□□□□ 0.92
SF3A1Q15459 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC20.8■□□□□ 0.92
SF3A1Q15459 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC20.8■□□□□ 0.92
SF3A1Q15459 AL512604.3-201ENST00000569583 964 ntBASIC20.8■□□□□ 0.92
SF3A1Q15459 NEK4P2-201ENST00000580004 1012 ntBASIC20.8■□□□□ 0.92
SF3A1Q15459 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
SF3A1Q15459 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC20.8■□□□□ 0.92
SF3A1Q15459 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
SF3A1Q15459 BRSK1-202ENST00000326848 2095 ntTSL 5 BASIC20.8■□□□□ 0.92
SF3A1Q15459 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC20.8■□□□□ 0.92
SF3A1Q15459 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
SF3A1Q15459 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC20.8■□□□□ 0.92
SF3A1Q15459 DAPK2-205ENST00000558069 1473 ntTSL 5 BASIC20.8■□□□□ 0.92
SF3A1Q15459 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
SF3A1Q15459 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
SF3A1Q15459 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
SF3A1Q15459 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC20.8■□□□□ 0.92
SF3A1Q15459 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
SF3A1Q15459 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
SF3A1Q15459 AMMECR1-201ENST00000262844 5504 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
SF3A1Q15459 FIBCD1-201ENST00000372337 1868 ntTSL 5 BASIC20.79■□□□□ 0.92
SF3A1Q15459 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC20.79■□□□□ 0.92
SF3A1Q15459 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC20.79■□□□□ 0.92
SF3A1Q15459 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
SF3A1Q15459 AC012317.2-201ENST00000623305 2251 ntBASIC20.79■□□□□ 0.92
SF3A1Q15459 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC20.79■□□□□ 0.92
SF3A1Q15459 SALL3-202ENST00000537592 6555 ntAPPRIS P1 TSL 5 BASIC20.79■□□□□ 0.92
SF3A1Q15459 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC20.79■□□□□ 0.92
SF3A1Q15459 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC20.79■□□□□ 0.92
SF3A1Q15459 AC087499.1-201ENST00000418141 1075 ntBASIC20.79■□□□□ 0.92
SF3A1Q15459 ECEL1P3-201ENST00000427961 737 ntBASIC20.79■□□□□ 0.92
SF3A1Q15459 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC20.79■□□□□ 0.92
SF3A1Q15459 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
SF3A1Q15459 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC20.79■□□□□ 0.92
SF3A1Q15459 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC20.79■□□□□ 0.92
SF3A1Q15459 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC20.79■□□□□ 0.92
SF3A1Q15459 CLN6-221ENST00000637494 765 ntTSL 5 BASIC20.79■□□□□ 0.92
SF3A1Q15459 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
SF3A1Q15459 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC20.79■□□□□ 0.92
SF3A1Q15459 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC20.79■□□□□ 0.92
SF3A1Q15459 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC20.79■□□□□ 0.92
SF3A1Q15459 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
SF3A1Q15459 FCGBP-203ENST00000620799 4926 ntTSL 5 BASIC20.79■□□□□ 0.92
SF3A1Q15459 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC20.79■□□□□ 0.92
SF3A1Q15459 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC20.79■□□□□ 0.92
SF3A1Q15459 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC20.79■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 58.2 ms