Protein–RNA interactions for Protein: P78413

IRX4, Iroquois-class homeodomain protein IRX-4, humanhuman

Predictions only

Length 519 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
IRX4P78413 PHRF1-205ENST00000533464 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
IRX4P78413 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
IRX4P78413 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
IRX4P78413 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
IRX4P78413 LINC01168-201ENST00000461291 5254 ntTSL 2 BASIC18.74■□□□□ 0.59
IRX4P78413 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
IRX4P78413 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
IRX4P78413 PTP4A1-201ENST00000370651 5088 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
IRX4P78413 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
IRX4P78413 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC18.74■□□□□ 0.59
IRX4P78413 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC18.74■□□□□ 0.59
IRX4P78413 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
IRX4P78413 DUSP4-201ENST00000240100 5537 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
IRX4P78413 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
IRX4P78413 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
IRX4P78413 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC18.74■□□□□ 0.59
IRX4P78413 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
IRX4P78413 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
IRX4P78413 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC18.74■□□□□ 0.59
IRX4P78413 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC18.74■□□□□ 0.59
IRX4P78413 GPALPP1-207ENST00000611650 899 ntBASIC18.74■□□□□ 0.59
IRX4P78413 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC18.74■□□□□ 0.59
IRX4P78413 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
IRX4P78413 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
IRX4P78413 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC18.74■□□□□ 0.59
IRX4P78413 AC067852.2-201ENST00000590513 2313 ntBASIC18.74■□□□□ 0.59
IRX4P78413 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC18.74■□□□□ 0.59
IRX4P78413 PTDSS1-202ENST00000517309 5177 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
IRX4P78413 WIPI2-201ENST00000288828 4476 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
IRX4P78413 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
IRX4P78413 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC18.74■□□□□ 0.59
IRX4P78413 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
IRX4P78413 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
IRX4P78413 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC18.73■□□□□ 0.59
IRX4P78413 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
IRX4P78413 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
IRX4P78413 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC18.73■□□□□ 0.59
IRX4P78413 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
IRX4P78413 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
IRX4P78413 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC18.73■□□□□ 0.59
IRX4P78413 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
IRX4P78413 NOC2LP2-201ENST00000407594 1944 ntBASIC18.73■□□□□ 0.59
IRX4P78413 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
IRX4P78413 AC069368.1-202ENST00000437723 750 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
IRX4P78413 NUS1P1-201ENST00000446295 882 ntBASIC18.73■□□□□ 0.59
IRX4P78413 AC009078.2-202ENST00000463353 338 ntBASIC18.73■□□□□ 0.59
IRX4P78413 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC18.73■□□□□ 0.59
IRX4P78413 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC18.73■□□□□ 0.59
IRX4P78413 ANKRD29-202ENST00000585908 846 ntTSL 2 BASIC18.73■□□□□ 0.59
IRX4P78413 BEAN1-211ENST00000622872 1171 ntAPPRIS P2 TSL 5 BASIC18.73■□□□□ 0.59
IRX4P78413 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC18.73■□□□□ 0.59
IRX4P78413 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC18.73■□□□□ 0.59
IRX4P78413 TOR3A-203ENST00000367627 2724 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
IRX4P78413 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
IRX4P78413 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
IRX4P78413 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC18.73■□□□□ 0.59
IRX4P78413 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
IRX4P78413 MAP7-209ENST00000618822 4497 ntAPPRIS ALT2 TSL 5 BASIC18.72■□□□□ 0.59
IRX4P78413 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
IRX4P78413 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC18.72■□□□□ 0.59
IRX4P78413 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
IRX4P78413 AP000997.3-201ENST00000623333 2250 ntBASIC18.72■□□□□ 0.59
IRX4P78413 ABALON-201ENST00000629058 1903 ntBASIC18.72■□□□□ 0.59
IRX4P78413 CXADR-201ENST00000284878 6254 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
IRX4P78413 AL499627.1-201ENST00000569373 2188 ntBASIC18.72■□□□□ 0.59
IRX4P78413 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
IRX4P78413 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
IRX4P78413 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
IRX4P78413 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
IRX4P78413 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC18.72■□□□□ 0.59
IRX4P78413 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
IRX4P78413 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC18.72■□□□□ 0.59
IRX4P78413 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC18.72■□□□□ 0.59
IRX4P78413 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
IRX4P78413 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
IRX4P78413 ING5-202ENST00000406941 946 ntAPPRIS ALT1 TSL 1 (best) BASIC18.72■□□□□ 0.59
IRX4P78413 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
IRX4P78413 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC18.72■□□□□ 0.59
IRX4P78413 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC18.72■□□□□ 0.59
IRX4P78413 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC18.72■□□□□ 0.59
IRX4P78413 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC18.72■□□□□ 0.59
IRX4P78413 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC18.72■□□□□ 0.59
IRX4P78413 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
IRX4P78413 AP002414.4-201ENST00000589764 1148 ntBASIC18.72■□□□□ 0.59
IRX4P78413 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC18.72■□□□□ 0.59
IRX4P78413 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC18.72■□□□□ 0.59
IRX4P78413 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
IRX4P78413 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC18.72■□□□□ 0.59
IRX4P78413 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC18.72■□□□□ 0.59
IRX4P78413 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
IRX4P78413 FAM208A-209ENST00000493960 5600 ntAPPRIS P2 TSL 5 BASIC18.72■□□□□ 0.59
IRX4P78413 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC18.72■□□□□ 0.59
IRX4P78413 WIZ-201ENST00000263381 5695 ntAPPRIS P2 TSL 2 BASIC18.72■□□□□ 0.59
IRX4P78413 IGF2-205ENST00000416167 5585 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
IRX4P78413 KDM5C-204ENST00000375401 6031 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
IRX4P78413 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
IRX4P78413 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
IRX4P78413 PTPRU-202ENST00000373779 5579 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
IRX4P78413 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC18.71■□□□□ 0.59
IRX4P78413 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC18.71■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 34.6 ms