Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
HDAC4P56524 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
HDAC4P56524 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
HDAC4P56524 WAC-202ENST00000347934 2839 ntTSL 5 BASIC18.82■□□□□ 0.6
HDAC4P56524 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
HDAC4P56524 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
HDAC4P56524 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
HDAC4P56524 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
HDAC4P56524 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
HDAC4P56524 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
HDAC4P56524 ADAMTS7-201ENST00000388820 5490 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
HDAC4P56524 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
HDAC4P56524 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
HDAC4P56524 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
HDAC4P56524 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC18.81■□□□□ 0.6
HDAC4P56524 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC18.81■□□□□ 0.6
HDAC4P56524 ADORA2A-213ENST00000610595 2736 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
HDAC4P56524 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
HDAC4P56524 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
HDAC4P56524 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC18.81■□□□□ 0.6
HDAC4P56524 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
HDAC4P56524 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
HDAC4P56524 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
HDAC4P56524 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
HDAC4P56524 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC18.81■□□□□ 0.6
HDAC4P56524 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
HDAC4P56524 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC18.8■□□□□ 0.6
HDAC4P56524 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC18.8■□□□□ 0.6
HDAC4P56524 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
HDAC4P56524 FZD1-201ENST00000287934 6963 ntAPPRIS P1 BASIC18.8■□□□□ 0.6
HDAC4P56524 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
HDAC4P56524 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC18.8■□□□□ 0.6
HDAC4P56524 MLXIP-201ENST00000319080 8427 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
HDAC4P56524 TBPL1-203ENST00000367871 808 ntTSL 2 BASIC18.8■□□□□ 0.6
HDAC4P56524 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC18.8■□□□□ 0.6
HDAC4P56524 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC18.8■□□□□ 0.6
HDAC4P56524 DAP-202ENST00000432074 1048 ntTSL 2 BASIC18.8■□□□□ 0.6
HDAC4P56524 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC18.8■□□□□ 0.6
HDAC4P56524 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC18.8■□□□□ 0.6
HDAC4P56524 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC18.8■□□□□ 0.6
HDAC4P56524 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC18.8■□□□□ 0.6
HDAC4P56524 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC18.8■□□□□ 0.6
HDAC4P56524 AC005332.3-201ENST00000589904 676 ntBASIC18.8■□□□□ 0.6
HDAC4P56524 GPR32P1-201ENST00000601788 811 ntBASIC18.8■□□□□ 0.6
HDAC4P56524 AL390719.2-201ENST00000606993 987 ntBASIC18.8■□□□□ 0.6
HDAC4P56524 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC18.8■□□□□ 0.6
HDAC4P56524 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
HDAC4P56524 SOCS2-212ENST00000622746 2881 ntAPPRIS P1 TSL 3 BASIC18.8■□□□□ 0.6
HDAC4P56524 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC18.8■□□□□ 0.6
HDAC4P56524 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
HDAC4P56524 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
HDAC4P56524 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
HDAC4P56524 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC18.8■□□□□ 0.6
HDAC4P56524 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC18.8■□□□□ 0.6
HDAC4P56524 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
HDAC4P56524 RHOV-201ENST00000220507 1705 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
HDAC4P56524 HCN4-201ENST00000261917 7228 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
HDAC4P56524 CLEC4G-201ENST00000328853 1360 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
HDAC4P56524 DPYSL3-202ENST00000398514 5309 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
HDAC4P56524 GABBR1-204ENST00000377016 4299 ntTSL 5 BASIC18.8■□□□□ 0.6
HDAC4P56524 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
HDAC4P56524 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
HDAC4P56524 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
HDAC4P56524 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
HDAC4P56524 SORCS3-202ENST00000369701 5757 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
HDAC4P56524 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC18.79■□□□□ 0.6
HDAC4P56524 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC18.79■□□□□ 0.6
HDAC4P56524 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
HDAC4P56524 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
HDAC4P56524 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
HDAC4P56524 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
HDAC4P56524 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC18.79■□□□□ 0.6
HDAC4P56524 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
HDAC4P56524 AL645929.1-201ENST00000420084 975 ntBASIC18.79■□□□□ 0.6
HDAC4P56524 SLC25A6P5-201ENST00000435663 894 ntBASIC18.79■□□□□ 0.6
HDAC4P56524 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC18.79■□□□□ 0.6
HDAC4P56524 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC18.79■□□□□ 0.6
HDAC4P56524 AL136038.3-201ENST00000561909 1096 ntBASIC18.79■□□□□ 0.6
HDAC4P56524 NAA38-203ENST00000575071 553 ntTSL 2 BASIC18.79■□□□□ 0.6
HDAC4P56524 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC18.79■□□□□ 0.6
HDAC4P56524 AL590326.2-201ENST00000625139 305 ntBASIC18.79■□□□□ 0.6
HDAC4P56524 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
HDAC4P56524 RALGPS1-208ENST00000424082 2362 ntTSL 2 BASIC18.79■□□□□ 0.6
HDAC4P56524 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC18.79■□□□□ 0.6
HDAC4P56524 CDK13-201ENST00000181839 7298 ntAPPRIS P4 TSL 1 (best) BASIC18.79■□□□□ 0.6
HDAC4P56524 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
HDAC4P56524 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
HDAC4P56524 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
HDAC4P56524 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC18.79■□□□□ 0.6
HDAC4P56524 EIF4G3-214ENST00000634879 5325 ntTSL 5 BASIC18.79■□□□□ 0.6
HDAC4P56524 RNF169-201ENST00000299563 7823 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
HDAC4P56524 GATB-213ENST00000515812 1893 ntTSL 5 BASIC18.79■□□□□ 0.6
HDAC4P56524 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
HDAC4P56524 AL353692.3-201ENST00000407031 1396 ntBASIC18.79■□□□□ 0.6
HDAC4P56524 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC18.79■□□□□ 0.6
HDAC4P56524 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
HDAC4P56524 AC100803.2-201ENST00000562459 1963 ntBASIC18.79■□□□□ 0.6
HDAC4P56524 MOAP1-201ENST00000298894 2441 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
HDAC4P56524 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
HDAC4P56524 EXTL3-201ENST00000220562 6483 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 43.1 ms