Protein–RNA interactions for Protein: P51956

NEK3, Serine/threonine-protein kinase Nek3, humanhuman

Predictions only

Length 506 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3P51956 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
NEK3P51956 KRT8P50-201ENST00000562022 1438 ntBASIC18.57■□□□□ 0.56
NEK3P51956 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
NEK3P51956 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
NEK3P51956 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
NEK3P51956 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
NEK3P51956 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC18.57■□□□□ 0.56
NEK3P51956 TRPM2-202ENST00000300482 5989 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
NEK3P51956 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
NEK3P51956 POR-209ENST00000439269 1858 ntTSL 2 BASIC18.56■□□□□ 0.56
NEK3P51956 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC18.56■□□□□ 0.56
NEK3P51956 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
NEK3P51956 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC18.56■□□□□ 0.56
NEK3P51956 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC18.56■□□□□ 0.56
NEK3P51956 PVRIG2P-201ENST00000435460 978 ntBASIC18.56■□□□□ 0.56
NEK3P51956 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC18.56■□□□□ 0.56
NEK3P51956 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC18.56■□□□□ 0.56
NEK3P51956 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
NEK3P51956 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC18.56■□□□□ 0.56
NEK3P51956 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC18.56■□□□□ 0.56
NEK3P51956 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC18.56■□□□□ 0.56
NEK3P51956 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC18.56■□□□□ 0.56
NEK3P51956 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC18.56■□□□□ 0.56
NEK3P51956 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
NEK3P51956 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC18.56■□□□□ 0.56
NEK3P51956 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
NEK3P51956 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC18.56■□□□□ 0.56
NEK3P51956 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC18.55■□□□□ 0.56
NEK3P51956 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC18.55■□□□□ 0.56
NEK3P51956 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC18.55■□□□□ 0.56
NEK3P51956 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC18.55■□□□□ 0.56
NEK3P51956 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
NEK3P51956 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
NEK3P51956 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC18.55■□□□□ 0.56
NEK3P51956 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
NEK3P51956 PBK-203ENST00000522944 1499 ntTSL 2 BASIC18.55■□□□□ 0.56
NEK3P51956 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC18.55■□□□□ 0.56
NEK3P51956 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
NEK3P51956 MIR662-201ENST00000384847 95 ntBASIC18.55■□□□□ 0.56
NEK3P51956 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
NEK3P51956 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC18.55■□□□□ 0.56
NEK3P51956 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
NEK3P51956 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
NEK3P51956 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC18.55■□□□□ 0.56
NEK3P51956 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC18.55■□□□□ 0.56
NEK3P51956 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC18.55■□□□□ 0.56
NEK3P51956 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC18.55■□□□□ 0.56
NEK3P51956 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC18.55■□□□□ 0.56
NEK3P51956 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC18.55■□□□□ 0.56
NEK3P51956 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
NEK3P51956 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
NEK3P51956 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC18.55■□□□□ 0.56
NEK3P51956 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
NEK3P51956 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
NEK3P51956 GNE-204ENST00000539208 2190 ntTSL 2 BASIC18.55■□□□□ 0.56
NEK3P51956 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC18.55■□□□□ 0.56
NEK3P51956 INPP5J-207ENST00000405300 2515 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
NEK3P51956 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
NEK3P51956 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
NEK3P51956 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC18.55■□□□□ 0.56
NEK3P51956 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
NEK3P51956 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC18.55■□□□□ 0.56
NEK3P51956 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC18.54■□□□□ 0.56
NEK3P51956 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
NEK3P51956 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
NEK3P51956 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
NEK3P51956 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
NEK3P51956 LANCL3-201ENST00000378619 3063 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
NEK3P51956 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
NEK3P51956 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
NEK3P51956 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC18.54■□□□□ 0.56
NEK3P51956 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC18.54■□□□□ 0.56
NEK3P51956 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
NEK3P51956 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
NEK3P51956 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
NEK3P51956 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC18.54■□□□□ 0.56
NEK3P51956 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC18.54■□□□□ 0.56
NEK3P51956 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC18.54■□□□□ 0.56
NEK3P51956 NAA38-203ENST00000575071 553 ntTSL 2 BASIC18.54■□□□□ 0.56
NEK3P51956 AC011498.5-201ENST00000592027 486 ntBASIC18.54■□□□□ 0.56
NEK3P51956 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC18.54■□□□□ 0.56
NEK3P51956 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC18.54■□□□□ 0.56
NEK3P51956 WDR6-223ENST00000627177 207 ntTSL 2 BASIC18.54■□□□□ 0.56
NEK3P51956 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
NEK3P51956 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
NEK3P51956 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
NEK3P51956 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
NEK3P51956 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
NEK3P51956 MYZAP-201ENST00000267853 2361 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
NEK3P51956 MCUR1-201ENST00000379170 5471 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
NEK3P51956 STAMBPL1-203ENST00000371926 2532 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
NEK3P51956 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
NEK3P51956 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
NEK3P51956 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC18.54■□□□□ 0.56
NEK3P51956 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
NEK3P51956 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC18.53■□□□□ 0.56
NEK3P51956 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
NEK3P51956 EML3-212ENST00000494176 2901 ntTSL 2 BASIC18.53■□□□□ 0.56
NEK3P51956 EML3-216ENST00000529309 2909 ntTSL 2 BASIC18.53■□□□□ 0.56
NEK3P51956 SPATS2L-218ENST00000451764 2250 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 61 ms