Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
PTPN9P43378 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC18.71■□□□□ 0.59
PTPN9P43378 GNAS-203ENST00000306120 1878 ntBASIC18.71■□□□□ 0.59
PTPN9P43378 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC18.71■□□□□ 0.59
PTPN9P43378 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC18.71■□□□□ 0.59
PTPN9P43378 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
PTPN9P43378 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.58
PTPN9P43378 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC18.7■□□□□ 0.58
PTPN9P43378 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC18.7■□□□□ 0.58
PTPN9P43378 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC18.7■□□□□ 0.58
PTPN9P43378 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
PTPN9P43378 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
PTPN9P43378 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
PTPN9P43378 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC18.7■□□□□ 0.58
PTPN9P43378 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC18.7■□□□□ 0.58
PTPN9P43378 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
PTPN9P43378 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
PTPN9P43378 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
PTPN9P43378 RN7SL606P-201ENST00000472779 293 ntBASIC18.7■□□□□ 0.58
PTPN9P43378 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC18.7■□□□□ 0.58
PTPN9P43378 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC18.7■□□□□ 0.58
PTPN9P43378 KRT18P35-201ENST00000510488 1269 ntBASIC18.7■□□□□ 0.58
PTPN9P43378 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC18.7■□□□□ 0.58
PTPN9P43378 RMI2-205ENST00000576027 818 ntTSL 2 BASIC18.7■□□□□ 0.58
PTPN9P43378 KHDC1-207ENST00000610435 1101 ntAPPRIS P3 TSL 5 BASIC18.7■□□□□ 0.58
PTPN9P43378 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
PTPN9P43378 AC116407.2-201ENST00000613639 860 ntBASIC18.7■□□□□ 0.58
PTPN9P43378 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC18.7■□□□□ 0.58
PTPN9P43378 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
PTPN9P43378 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
PTPN9P43378 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
PTPN9P43378 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
PTPN9P43378 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
PTPN9P43378 CCDC74A-206ENST00000467992 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
PTPN9P43378 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC18.7■□□□□ 0.58
PTPN9P43378 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
PTPN9P43378 GNE-204ENST00000539208 2190 ntTSL 2 BASIC18.69■□□□□ 0.58
PTPN9P43378 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
PTPN9P43378 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
PTPN9P43378 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC18.69■□□□□ 0.58
PTPN9P43378 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
PTPN9P43378 SDCBP2-201ENST00000339987 1404 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
PTPN9P43378 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
PTPN9P43378 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC18.69■□□□□ 0.58
PTPN9P43378 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC18.69■□□□□ 0.58
PTPN9P43378 PCED1CP-201ENST00000419887 785 ntBASIC18.69■□□□□ 0.58
PTPN9P43378 GUSBP12-201ENST00000513727 720 ntBASIC18.69■□□□□ 0.58
PTPN9P43378 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC18.69■□□□□ 0.58
PTPN9P43378 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC18.69■□□□□ 0.58
PTPN9P43378 AC010331.1-201ENST00000611423 582 ntBASIC18.69■□□□□ 0.58
PTPN9P43378 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC18.69■□□□□ 0.58
PTPN9P43378 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
PTPN9P43378 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
PTPN9P43378 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
PTPN9P43378 INPP5J-205ENST00000404390 2215 ntAPPRIS P3 TSL 2 BASIC18.69■□□□□ 0.58
PTPN9P43378 AC134043.2-201ENST00000624206 2238 ntBASIC18.69■□□□□ 0.58
PTPN9P43378 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC18.69■□□□□ 0.58
PTPN9P43378 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC18.69■□□□□ 0.58
PTPN9P43378 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC18.68■□□□□ 0.58
PTPN9P43378 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
PTPN9P43378 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
PTPN9P43378 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
PTPN9P43378 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
PTPN9P43378 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
PTPN9P43378 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC18.68■□□□□ 0.58
PTPN9P43378 JMJD7-201ENST00000397299 1416 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
PTPN9P43378 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC18.68■□□□□ 0.58
PTPN9P43378 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
PTPN9P43378 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
PTPN9P43378 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
PTPN9P43378 FSTL1-201ENST00000295633 5943 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
PTPN9P43378 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
PTPN9P43378 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
PTPN9P43378 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC18.68■□□□□ 0.58
PTPN9P43378 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
PTPN9P43378 AC090616.6-201ENST00000582640 721 ntBASIC18.68■□□□□ 0.58
PTPN9P43378 AL353801.3-201ENST00000609898 542 ntBASIC18.68■□□□□ 0.58
PTPN9P43378 EML2-AS1-203ENST00000623430 886 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
PTPN9P43378 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
PTPN9P43378 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
PTPN9P43378 NME9-203ENST00000383180 2133 ntTSL 2 BASIC18.68■□□□□ 0.58
PTPN9P43378 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC18.68■□□□□ 0.58
PTPN9P43378 RALGPS1-208ENST00000424082 2362 ntTSL 2 BASIC18.68■□□□□ 0.58
PTPN9P43378 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
PTPN9P43378 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
PTPN9P43378 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
PTPN9P43378 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
PTPN9P43378 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
PTPN9P43378 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
PTPN9P43378 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
PTPN9P43378 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
PTPN9P43378 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC18.67■□□□□ 0.58
PTPN9P43378 MED29-202ENST00000594368 1471 ntTSL 2 BASIC18.67■□□□□ 0.58
PTPN9P43378 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC18.67■□□□□ 0.58
PTPN9P43378 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
PTPN9P43378 GPR32-201ENST00000270590 1269 ntAPPRIS P1 BASIC18.67■□□□□ 0.58
PTPN9P43378 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
PTPN9P43378 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
PTPN9P43378 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC18.67■□□□□ 0.58
PTPN9P43378 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 33 ms