Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 MAP1LC3B-201ENST00000268607 2688 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
CXCL1P09341 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC13.98□□□□□ -0.17
CXCL1P09341 INPP5K-204ENST00000421807 2988 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
CXCL1P09341 NFATC4-203ENST00000422617 5491 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
CXCL1P09341 PDGFA-203ENST00000402802 2305 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
CXCL1P09341 KCNC2-209ENST00000550433 2931 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
CXCL1P09341 ATP2C1-218ENST00000510168 5067 ntAPPRIS ALT1 TSL 5 BASIC13.98□□□□□ -0.17
CXCL1P09341 FDX1-201ENST00000260270 3206 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
CXCL1P09341 AIFM2-201ENST00000307864 3243 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
CXCL1P09341 BRF1-201ENST00000327359 2292 ntTSL 2 BASIC13.98□□□□□ -0.17
CXCL1P09341 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
CXCL1P09341 FBLN1-202ENST00000327858 2896 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
CXCL1P09341 GRAMD2B-201ENST00000285689 3175 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
CXCL1P09341 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
CXCL1P09341 ZNF799-201ENST00000419318 3036 ntTSL 2 BASIC13.98□□□□□ -0.17
CXCL1P09341 AL138688.1-201ENST00000624851 1594 ntBASIC13.98□□□□□ -0.17
CXCL1P09341 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
CXCL1P09341 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC13.98□□□□□ -0.17
CXCL1P09341 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC13.98□□□□□ -0.17
CXCL1P09341 LCE2A-201ENST00000368779 592 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
CXCL1P09341 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC13.98□□□□□ -0.17
CXCL1P09341 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC13.98□□□□□ -0.17
CXCL1P09341 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC13.98□□□□□ -0.17
CXCL1P09341 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC13.98□□□□□ -0.17
CXCL1P09341 KRT18P5-201ENST00000436075 1291 ntBASIC13.98□□□□□ -0.17
CXCL1P09341 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC13.98□□□□□ -0.17
CXCL1P09341 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
CXCL1P09341 RPS2P52-201ENST00000469610 820 ntBASIC13.98□□□□□ -0.17
CXCL1P09341 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC13.98□□□□□ -0.17
CXCL1P09341 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC13.98□□□□□ -0.17
CXCL1P09341 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC13.98□□□□□ -0.17
CXCL1P09341 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC13.98□□□□□ -0.17
CXCL1P09341 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
CXCL1P09341 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC13.98□□□□□ -0.17
CXCL1P09341 KDM6A-212ENST00000543216 5655 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
CXCL1P09341 EPB41L3-202ENST00000342933 4270 ntAPPRIS ALT2 TSL 5 BASIC13.98□□□□□ -0.17
CXCL1P09341 EIF4ENIF1-206ENST00000397525 3695 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
CXCL1P09341 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
CXCL1P09341 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
CXCL1P09341 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC13.98□□□□□ -0.17
CXCL1P09341 TLE3-212ENST00000558201 2766 ntTSL 5 BASIC13.98□□□□□ -0.17
CXCL1P09341 MCF2L-203ENST00000375604 6445 ntAPPRIS P3 TSL 2 BASIC13.98□□□□□ -0.17
CXCL1P09341 GPAT2-204ENST00000453542 2466 ntTSL 2 BASIC13.98□□□□□ -0.17
CXCL1P09341 DNAJB9-201ENST00000249356 2715 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
CXCL1P09341 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
CXCL1P09341 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
CXCL1P09341 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
CXCL1P09341 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
CXCL1P09341 DCAF5-201ENST00000341516 5953 ntAPPRIS P3 TSL 1 (best) BASIC13.97□□□□□ -0.17
CXCL1P09341 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
CXCL1P09341 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC13.97□□□□□ -0.17
CXCL1P09341 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC13.97□□□□□ -0.17
CXCL1P09341 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
CXCL1P09341 MAPT-205ENST00000351559 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
CXCL1P09341 AP3D1-202ENST00000355272 5034 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
CXCL1P09341 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC13.97□□□□□ -0.17
CXCL1P09341 ADGRB2-201ENST00000373655 5400 ntAPPRIS P4 TSL 1 (best) BASIC13.97□□□□□ -0.17
CXCL1P09341 ZBTB7C-221ENST00000590800 4947 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
CXCL1P09341 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC13.97□□□□□ -0.17
CXCL1P09341 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC13.97□□□□□ -0.17
CXCL1P09341 SLC17A7-204ENST00000600601 2237 ntTSL 2 BASIC13.97□□□□□ -0.17
CXCL1P09341 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
CXCL1P09341 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC13.97□□□□□ -0.17
CXCL1P09341 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
CXCL1P09341 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC13.97□□□□□ -0.17
CXCL1P09341 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC13.97□□□□□ -0.17
CXCL1P09341 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC13.97□□□□□ -0.17
CXCL1P09341 TUBB8P6-201ENST00000436895 1288 ntBASIC13.97□□□□□ -0.17
CXCL1P09341 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC13.97□□□□□ -0.17
CXCL1P09341 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC13.97□□□□□ -0.17
CXCL1P09341 MYC-208ENST00000641036 567 ntBASIC13.97□□□□□ -0.17
CXCL1P09341 IRX6-201ENST00000290552 3128 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
CXCL1P09341 DIMT1-201ENST00000199320 2859 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
CXCL1P09341 AL355312.1-201ENST00000407115 2176 ntBASIC13.97□□□□□ -0.17
CXCL1P09341 SATB1-201ENST00000338745 7810 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
CXCL1P09341 DIRAS2-201ENST00000375765 4386 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
CXCL1P09341 AC022188.1-201ENST00000620960 1664 ntBASIC13.97□□□□□ -0.17
CXCL1P09341 ILVBL-201ENST00000263383 2304 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
CXCL1P09341 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
CXCL1P09341 REPS1-208ENST00000450536 4537 ntAPPRIS ALT1 TSL 1 (best) BASIC13.97□□□□□ -0.17
CXCL1P09341 PNKD-202ENST00000258362 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
CXCL1P09341 PAUPAR-201ENST00000630360 2965 ntBASIC13.97□□□□□ -0.17
CXCL1P09341 PTDSS1-202ENST00000517309 5177 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
CXCL1P09341 REPS1-201ENST00000258062 3161 ntAPPRIS P3 TSL 1 (best) BASIC13.97□□□□□ -0.17
CXCL1P09341 PRKAG1-206ENST00000548065 2071 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
CXCL1P09341 TSPYL5-201ENST00000322128 4491 ntAPPRIS P1 BASIC13.97□□□□□ -0.17
CXCL1P09341 GOLGA6L5P-202ENST00000515341 1828 ntBASIC13.97□□□□□ -0.17
CXCL1P09341 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC13.96□□□□□ -0.17
CXCL1P09341 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC13.96□□□□□ -0.17
CXCL1P09341 KLC4-202ENST00000347162 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.17
CXCL1P09341 CDC14A-202ENST00000361544 2417 ntAPPRIS P4 TSL 1 (best) BASIC13.96□□□□□ -0.17
CXCL1P09341 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
CXCL1P09341 FBXO46-201ENST00000317683 3001 ntAPPRIS P1 TSL 2 BASIC13.96□□□□□ -0.17
CXCL1P09341 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC13.96□□□□□ -0.17
CXCL1P09341 IPMK-201ENST00000373935 6133 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
CXCL1P09341 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.17
CXCL1P09341 PNMA6E-202ENST00000633844 2596 ntTSL 3 BASIC13.96□□□□□ -0.17
CXCL1P09341 EVPL-202ENST00000586740 6223 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
CXCL1P09341 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC13.96□□□□□ -0.17
CXCL1P09341 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC13.96□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 56.8 ms