Protein–RNA interactions for Protein: P02708

CHRNA1, Acetylcholine receptor subunit alpha, humanhuman

Predictions only

Length 482 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHRNA1P02708 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC19.5■□□□□ 0.71
CHRNA1P02708 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC19.5■□□□□ 0.71
CHRNA1P02708 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC19.5■□□□□ 0.71
CHRNA1P02708 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC19.5■□□□□ 0.71
CHRNA1P02708 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC19.5■□□□□ 0.71
CHRNA1P02708 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC19.5■□□□□ 0.71
CHRNA1P02708 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC19.5■□□□□ 0.71
CHRNA1P02708 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CHRNA1P02708 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC19.5■□□□□ 0.71
CHRNA1P02708 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC19.49■□□□□ 0.71
CHRNA1P02708 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CHRNA1P02708 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
CHRNA1P02708 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC19.49■□□□□ 0.71
CHRNA1P02708 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
CHRNA1P02708 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
CHRNA1P02708 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC19.49■□□□□ 0.71
CHRNA1P02708 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC19.49■□□□□ 0.71
CHRNA1P02708 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CHRNA1P02708 ROMO1-201ENST00000336695 496 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CHRNA1P02708 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
CHRNA1P02708 AL591424.1-201ENST00000442569 1213 ntBASIC19.49■□□□□ 0.71
CHRNA1P02708 PON3-205ENST00000451904 1053 ntTSL 3 BASIC19.49■□□□□ 0.71
CHRNA1P02708 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC19.49■□□□□ 0.71
CHRNA1P02708 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC19.49■□□□□ 0.71
CHRNA1P02708 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC19.49■□□□□ 0.71
CHRNA1P02708 COX5A-202ENST00000562233 441 ntTSL 3 BASIC19.49■□□□□ 0.71
CHRNA1P02708 HEXIM2-207ENST00000592695 1246 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CHRNA1P02708 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC19.49■□□□□ 0.71
CHRNA1P02708 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC19.49■□□□□ 0.71
CHRNA1P02708 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC19.49■□□□□ 0.71
CHRNA1P02708 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC19.48■□□□□ 0.71
CHRNA1P02708 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CHRNA1P02708 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CHRNA1P02708 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC19.48■□□□□ 0.71
CHRNA1P02708 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC19.48■□□□□ 0.71
CHRNA1P02708 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
CHRNA1P02708 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
CHRNA1P02708 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC19.48■□□□□ 0.71
CHRNA1P02708 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC19.48■□□□□ 0.71
CHRNA1P02708 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC19.48■□□□□ 0.71
CHRNA1P02708 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC19.48■□□□□ 0.71
CHRNA1P02708 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CHRNA1P02708 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
CHRNA1P02708 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
CHRNA1P02708 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
CHRNA1P02708 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CHRNA1P02708 IMP4-203ENST00000409935 958 ntTSL 5 BASIC19.48■□□□□ 0.71
CHRNA1P02708 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC19.48■□□□□ 0.71
CHRNA1P02708 KRT18P3-201ENST00000451602 1288 ntBASIC19.48■□□□□ 0.71
CHRNA1P02708 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CHRNA1P02708 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC19.48■□□□□ 0.71
CHRNA1P02708 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC19.48■□□□□ 0.71
CHRNA1P02708 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC19.48■□□□□ 0.71
CHRNA1P02708 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC19.48■□□□□ 0.71
CHRNA1P02708 AC243773.2-203ENST00000612281 640 ntTSL 3 BASIC19.48■□□□□ 0.71
CHRNA1P02708 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC19.48■□□□□ 0.71
CHRNA1P02708 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
CHRNA1P02708 MOV10L1-203ENST00000395852 1422 ntTSL 2 BASIC19.48■□□□□ 0.71
CHRNA1P02708 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CHRNA1P02708 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
CHRNA1P02708 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
CHRNA1P02708 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC19.48■□□□□ 0.71
CHRNA1P02708 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC19.48■□□□□ 0.71
CHRNA1P02708 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
CHRNA1P02708 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC19.47■□□□□ 0.71
CHRNA1P02708 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CHRNA1P02708 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CHRNA1P02708 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC19.47■□□□□ 0.71
CHRNA1P02708 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC19.47■□□□□ 0.71
CHRNA1P02708 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
CHRNA1P02708 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CHRNA1P02708 COX5BP2-201ENST00000392354 334 ntBASIC19.47■□□□□ 0.71
CHRNA1P02708 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC19.47■□□□□ 0.71
CHRNA1P02708 KRT18P27-201ENST00000427733 1299 ntBASIC19.47■□□□□ 0.71
CHRNA1P02708 AC005104.2-201ENST00000427818 678 ntBASIC19.47■□□□□ 0.71
CHRNA1P02708 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC19.47■□□□□ 0.71
CHRNA1P02708 PRYP5-201ENST00000451909 266 ntBASIC19.47■□□□□ 0.71
CHRNA1P02708 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
CHRNA1P02708 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC19.47■□□□□ 0.71
CHRNA1P02708 RPS29-206ENST00000557111 488 ntTSL 2 BASIC19.47■□□□□ 0.71
CHRNA1P02708 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC19.47■□□□□ 0.71
CHRNA1P02708 AC055717.3-201ENST00000622967 595 ntBASIC19.47■□□□□ 0.71
CHRNA1P02708 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
CHRNA1P02708 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC19.47■□□□□ 0.71
CHRNA1P02708 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CHRNA1P02708 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC19.47■□□□□ 0.71
CHRNA1P02708 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CHRNA1P02708 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC19.47■□□□□ 0.71
CHRNA1P02708 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CHRNA1P02708 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC19.47■□□□□ 0.71
CHRNA1P02708 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
CHRNA1P02708 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
CHRNA1P02708 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
CHRNA1P02708 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
CHRNA1P02708 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CHRNA1P02708 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
CHRNA1P02708 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC19.46■□□□□ 0.71
CHRNA1P02708 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC19.46■□□□□ 0.71
CHRNA1P02708 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CHRNA1P02708 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC19.46■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 25.7 ms