Protein–RNA interactions for Protein: Q9Y6N9

USH1C, Harmonin, humanhuman

Predictions only

Length 552 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USH1CQ9Y6N9 STK39-201ENST00000355999 3820 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
USH1CQ9Y6N9 AP000347.2-202ENST00000421064 3041 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
USH1CQ9Y6N9 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC17.99■□□□□ 0.47
USH1CQ9Y6N9 CRAMP1-202ENST00000397412 7772 ntAPPRIS P1 TSL 5 BASIC17.99■□□□□ 0.47
USH1CQ9Y6N9 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
USH1CQ9Y6N9 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC17.99■□□□□ 0.47
USH1CQ9Y6N9 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC17.99■□□□□ 0.47
USH1CQ9Y6N9 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC17.99■□□□□ 0.47
USH1CQ9Y6N9 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC17.99■□□□□ 0.47
USH1CQ9Y6N9 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
USH1CQ9Y6N9 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC17.99■□□□□ 0.47
USH1CQ9Y6N9 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC17.99■□□□□ 0.47
USH1CQ9Y6N9 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC17.99■□□□□ 0.47
USH1CQ9Y6N9 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC17.99■□□□□ 0.47
USH1CQ9Y6N9 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC17.99■□□□□ 0.47
USH1CQ9Y6N9 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC17.99■□□□□ 0.47
USH1CQ9Y6N9 AL445675.2-201ENST00000620291 557 ntBASIC17.99■□□□□ 0.47
USH1CQ9Y6N9 AC131212.4-201ENST00000623606 975 ntBASIC17.99■□□□□ 0.47
USH1CQ9Y6N9 RGS11-202ENST00000316163 2376 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
USH1CQ9Y6N9 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC17.99■□□□□ 0.47
USH1CQ9Y6N9 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
USH1CQ9Y6N9 AL031282.2-201ENST00000598846 5079 ntTSL 2 BASIC17.99■□□□□ 0.47
USH1CQ9Y6N9 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC17.99■□□□□ 0.47
USH1CQ9Y6N9 ADARB2-203ENST00000381312 8421 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
USH1CQ9Y6N9 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC17.99■□□□□ 0.47
USH1CQ9Y6N9 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
USH1CQ9Y6N9 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC17.99■□□□□ 0.47
USH1CQ9Y6N9 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
USH1CQ9Y6N9 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
USH1CQ9Y6N9 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC17.99■□□□□ 0.47
USH1CQ9Y6N9 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC17.98■□□□□ 0.47
USH1CQ9Y6N9 OARD1-202ENST00000424266 1337 ntAPPRIS P1 TSL 2 BASIC17.98■□□□□ 0.47
USH1CQ9Y6N9 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
USH1CQ9Y6N9 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC17.98■□□□□ 0.47
USH1CQ9Y6N9 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC17.98■□□□□ 0.47
USH1CQ9Y6N9 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC17.98■□□□□ 0.47
USH1CQ9Y6N9 ETV4-211ENST00000591713 1727 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
USH1CQ9Y6N9 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC17.98■□□□□ 0.47
USH1CQ9Y6N9 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
USH1CQ9Y6N9 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
USH1CQ9Y6N9 SEMA7A-201ENST00000261918 3885 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
USH1CQ9Y6N9 C15orf38-AP3S2-201ENST00000398333 2439 ntAPPRIS P1 TSL 2 BASIC17.98■□□□□ 0.47
USH1CQ9Y6N9 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
USH1CQ9Y6N9 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
USH1CQ9Y6N9 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC17.98■□□□□ 0.47
USH1CQ9Y6N9 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC17.98■□□□□ 0.47
USH1CQ9Y6N9 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC17.98■□□□□ 0.47
USH1CQ9Y6N9 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC17.98■□□□□ 0.47
USH1CQ9Y6N9 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC17.98■□□□□ 0.47
USH1CQ9Y6N9 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC17.98■□□□□ 0.47
USH1CQ9Y6N9 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
USH1CQ9Y6N9 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
USH1CQ9Y6N9 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC17.98■□□□□ 0.47
USH1CQ9Y6N9 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
USH1CQ9Y6N9 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
USH1CQ9Y6N9 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
USH1CQ9Y6N9 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC17.98■□□□□ 0.47
USH1CQ9Y6N9 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
USH1CQ9Y6N9 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
USH1CQ9Y6N9 PCDHA1-203ENST00000504120 5263 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
USH1CQ9Y6N9 CACNA1G-202ENST00000354983 8138 ntAPPRIS ALT2 TSL 5 BASIC17.98■□□□□ 0.47
USH1CQ9Y6N9 XKR7-201ENST00000562532 7844 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
USH1CQ9Y6N9 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC17.98■□□□□ 0.47
USH1CQ9Y6N9 MFSD11-207ENST00000586622 2952 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.47
USH1CQ9Y6N9 ADRB1-201ENST00000369295 2853 ntAPPRIS P1 BASIC17.97■□□□□ 0.47
USH1CQ9Y6N9 AC046158.3-201ENST00000624947 2558 ntBASIC17.97■□□□□ 0.47
USH1CQ9Y6N9 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
USH1CQ9Y6N9 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
USH1CQ9Y6N9 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC17.97■□□□□ 0.47
USH1CQ9Y6N9 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
USH1CQ9Y6N9 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC17.97■□□□□ 0.47
USH1CQ9Y6N9 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC17.97■□□□□ 0.47
USH1CQ9Y6N9 AL109659.2-201ENST00000606809 1674 ntBASIC17.97■□□□□ 0.47
USH1CQ9Y6N9 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
USH1CQ9Y6N9 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC17.97■□□□□ 0.47
USH1CQ9Y6N9 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
USH1CQ9Y6N9 ENSA-205ENST00000361532 792 ntTSL 2 BASIC17.97■□□□□ 0.47
USH1CQ9Y6N9 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC17.97■□□□□ 0.47
USH1CQ9Y6N9 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC17.97■□□□□ 0.47
USH1CQ9Y6N9 AC004980.1-204ENST00000429707 299 ntBASIC17.97■□□□□ 0.47
USH1CQ9Y6N9 MAP2K4P1-201ENST00000438453 1195 ntBASIC17.97■□□□□ 0.47
USH1CQ9Y6N9 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC17.97■□□□□ 0.47
USH1CQ9Y6N9 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC17.97■□□□□ 0.47
USH1CQ9Y6N9 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC17.97■□□□□ 0.47
USH1CQ9Y6N9 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
USH1CQ9Y6N9 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC17.97■□□□□ 0.47
USH1CQ9Y6N9 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC17.97■□□□□ 0.47
USH1CQ9Y6N9 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
USH1CQ9Y6N9 MTDHP1-201ENST00000605323 784 ntBASIC17.97■□□□□ 0.47
USH1CQ9Y6N9 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC17.97■□□□□ 0.47
USH1CQ9Y6N9 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
USH1CQ9Y6N9 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC17.97■□□□□ 0.47
USH1CQ9Y6N9 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC17.97■□□□□ 0.47
USH1CQ9Y6N9 ZC3H7B-201ENST00000352645 5909 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
USH1CQ9Y6N9 SRGAP2B-207ENST00000641863 2367 ntAPPRIS P5 BASIC17.97■□□□□ 0.47
USH1CQ9Y6N9 PEX6-202ENST00000304611 3478 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
USH1CQ9Y6N9 PRKAG1-206ENST00000548065 2071 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
USH1CQ9Y6N9 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.47
USH1CQ9Y6N9 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
USH1CQ9Y6N9 SH3RF1-201ENST00000284637 5272 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 39.1 ms