Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC5.58□□□□□ -1.52
SYNE1Q8NF91 ASIC1-201ENST00000228468 4072 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
SYNE1Q8NF91 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC5.58□□□□□ -1.52
SYNE1Q8NF91 KRT18P31-201ENST00000506277 1292 ntBASIC5.58□□□□□ -1.52
SYNE1Q8NF91 AF228730.7-201ENST00000641842 219 ntBASIC5.58□□□□□ -1.52
SYNE1Q8NF91 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC5.58□□□□□ -1.52
SYNE1Q8NF91 ACTN4-201ENST00000252699 4963 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
SYNE1Q8NF91 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
SYNE1Q8NF91 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC5.58□□□□□ -1.52
SYNE1Q8NF91 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
SYNE1Q8NF91 CTTN-202ENST00000346329 3272 ntAPPRIS P3 TSL 1 (best) BASIC5.58□□□□□ -1.52
SYNE1Q8NF91 PPP6R1-201ENST00000412770 3961 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
SYNE1Q8NF91 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC5.58□□□□□ -1.52
SYNE1Q8NF91 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC5.58□□□□□ -1.52
SYNE1Q8NF91 BRF1-211ENST00000547530 3358 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
SYNE1Q8NF91 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
SYNE1Q8NF91 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
SYNE1Q8NF91 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
SYNE1Q8NF91 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
SYNE1Q8NF91 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC5.58□□□□□ -1.52
SYNE1Q8NF91 AL512343.2-201ENST00000609423 490 ntTSL 2 BASIC5.58□□□□□ -1.52
SYNE1Q8NF91 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC5.58□□□□□ -1.52
SYNE1Q8NF91 CD151-203ENST00000397421 1486 ntAPPRIS P2 TSL 1 (best) BASIC5.58□□□□□ -1.52
SYNE1Q8NF91 DACH1-204ENST00000620444 4627 ntAPPRIS ALT2 TSL 5 BASIC5.58□□□□□ -1.52
SYNE1Q8NF91 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
SYNE1Q8NF91 FNBP1-202ENST00000420781 5410 ntAPPRIS ALT1 TSL 1 (best) BASIC5.58□□□□□ -1.52
SYNE1Q8NF91 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC5.58□□□□□ -1.52
SYNE1Q8NF91 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC5.58□□□□□ -1.52
SYNE1Q8NF91 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC5.58□□□□□ -1.52
SYNE1Q8NF91 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC5.58□□□□□ -1.52
SYNE1Q8NF91 P2RY6-207ENST00000538328 1425 ntAPPRIS P1 TSL 3 BASIC5.58□□□□□ -1.52
SYNE1Q8NF91 AL032819.2-201ENST00000624543 2162 ntBASIC5.58□□□□□ -1.52
SYNE1Q8NF91 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC5.58□□□□□ -1.52
SYNE1Q8NF91 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
SYNE1Q8NF91 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC5.58□□□□□ -1.52
SYNE1Q8NF91 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
SYNE1Q8NF91 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC5.58□□□□□ -1.52
SYNE1Q8NF91 AC010226.1-202ENST00000508517 539 ntTSL 2 BASIC5.58□□□□□ -1.52
SYNE1Q8NF91 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
SYNE1Q8NF91 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC5.58□□□□□ -1.52
SYNE1Q8NF91 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC5.58□□□□□ -1.52
SYNE1Q8NF91 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
SYNE1Q8NF91 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC5.58□□□□□ -1.52
SYNE1Q8NF91 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
SYNE1Q8NF91 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
SYNE1Q8NF91 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC5.57□□□□□ -1.52
SYNE1Q8NF91 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
SYNE1Q8NF91 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
SYNE1Q8NF91 KLHL26-201ENST00000300976 4407 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
SYNE1Q8NF91 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
SYNE1Q8NF91 MTRF1L-201ENST00000367230 3431 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
SYNE1Q8NF91 ELAVL2-201ENST00000223951 3763 ntAPPRIS ALT1 TSL 1 (best) BASIC5.57□□□□□ -1.52
SYNE1Q8NF91 LRRFIP1-201ENST00000244815 4370 ntAPPRIS P3 TSL 1 (best) BASIC5.57□□□□□ -1.52
SYNE1Q8NF91 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC5.57□□□□□ -1.52
SYNE1Q8NF91 DRAXINP1-201ENST00000437611 948 ntBASIC5.57□□□□□ -1.52
SYNE1Q8NF91 AL049869.3-201ENST00000554918 558 ntTSL 3 BASIC5.57□□□□□ -1.52
SYNE1Q8NF91 TK1-205ENST00000590862 642 ntTSL 3 BASIC5.57□□□□□ -1.52
SYNE1Q8NF91 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC5.57□□□□□ -1.52
SYNE1Q8NF91 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC5.57□□□□□ -1.52
SYNE1Q8NF91 PEA15-202ENST00000368076 2694 ntTSL 2 BASIC5.57□□□□□ -1.52
SYNE1Q8NF91 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
SYNE1Q8NF91 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
SYNE1Q8NF91 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
SYNE1Q8NF91 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC5.57□□□□□ -1.52
SYNE1Q8NF91 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
SYNE1Q8NF91 KCNT1-209ENST00000490355 3708 ntAPPRIS ALT2 TSL 5 BASIC5.57□□□□□ -1.52
SYNE1Q8NF91 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC5.57□□□□□ -1.52
SYNE1Q8NF91 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC5.57□□□□□ -1.52
SYNE1Q8NF91 FAAHP1-202ENST00000446499 1238 ntBASIC5.57□□□□□ -1.52
SYNE1Q8NF91 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC5.57□□□□□ -1.52
SYNE1Q8NF91 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC5.57□□□□□ -1.52
SYNE1Q8NF91 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC5.57□□□□□ -1.52
SYNE1Q8NF91 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
SYNE1Q8NF91 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
SYNE1Q8NF91 PPRC1-201ENST00000278070 5330 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
SYNE1Q8NF91 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
SYNE1Q8NF91 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC5.57□□□□□ -1.52
SYNE1Q8NF91 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC5.57□□□□□ -1.52
SYNE1Q8NF91 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
SYNE1Q8NF91 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC5.57□□□□□ -1.52
SYNE1Q8NF91 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC5.57□□□□□ -1.52
SYNE1Q8NF91 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
SYNE1Q8NF91 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC5.57□□□□□ -1.52
SYNE1Q8NF91 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC5.57□□□□□ -1.52
SYNE1Q8NF91 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
SYNE1Q8NF91 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
SYNE1Q8NF91 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC5.57□□□□□ -1.52
SYNE1Q8NF91 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC5.57□□□□□ -1.52
SYNE1Q8NF91 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC5.57□□□□□ -1.52
SYNE1Q8NF91 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC5.57□□□□□ -1.52
SYNE1Q8NF91 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC5.57□□□□□ -1.52
SYNE1Q8NF91 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
SYNE1Q8NF91 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
SYNE1Q8NF91 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC5.57□□□□□ -1.52
SYNE1Q8NF91 MYO1B-204ENST00000392318 5082 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
SYNE1Q8NF91 CSRNP2-201ENST00000228515 4471 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
SYNE1Q8NF91 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
SYNE1Q8NF91 RASGRP2-206ENST00000377494 2983 ntAPPRIS ALT1 TSL 2 BASIC5.57□□□□□ -1.52
SYNE1Q8NF91 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
SYNE1Q8NF91 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 37.2 ms