Protein–RNA interactions for Protein: Q8N3P4

VPS8, Vacuolar protein sorting-associated protein 8 homolog, humanhuman

Predictions only

Length 1,428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS8Q8N3P4 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC28.07■■■□□ 2.08
VPS8Q8N3P4 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC28.07■■■□□ 2.08
VPS8Q8N3P4 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC28.07■■■□□ 2.08
VPS8Q8N3P4 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC28.07■■■□□ 2.08
VPS8Q8N3P4 CHCHD1-201ENST00000372833 835 ntAPPRIS P1 TSL 1 (best) BASIC28.07■■■□□ 2.08
VPS8Q8N3P4 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC28.07■■■□□ 2.08
VPS8Q8N3P4 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC28.07■■■□□ 2.08
VPS8Q8N3P4 AP002469.2-201ENST00000531724 424 ntBASIC28.07■■■□□ 2.08
VPS8Q8N3P4 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC28.07■■■□□ 2.08
VPS8Q8N3P4 AL121912.1-201ENST00000603683 238 ntBASIC28.07■■■□□ 2.08
VPS8Q8N3P4 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC28.07■■■□□ 2.08
VPS8Q8N3P4 VPS51-217ENST00000639871 243 ntTSL 5 BASIC28.07■■■□□ 2.08
VPS8Q8N3P4 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC28.07■■■□□ 2.08
VPS8Q8N3P4 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC28.07■■■□□ 2.08
VPS8Q8N3P4 CD151-203ENST00000397421 1486 ntAPPRIS P2 TSL 1 (best) BASIC28.07■■■□□ 2.08
VPS8Q8N3P4 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC28.07■■■□□ 2.08
VPS8Q8N3P4 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC28.07■■■□□ 2.08
VPS8Q8N3P4 ASB7-203ENST00000558747 2133 ntTSL 5 BASIC28.07■■■□□ 2.08
VPS8Q8N3P4 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC28.07■■■□□ 2.08
VPS8Q8N3P4 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC28.06■■■□□ 2.08
VPS8Q8N3P4 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC28.06■■■□□ 2.08
VPS8Q8N3P4 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC28.06■■■□□ 2.08
VPS8Q8N3P4 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC28.06■■■□□ 2.08
VPS8Q8N3P4 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC28.06■■■□□ 2.08
VPS8Q8N3P4 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC28.06■■■□□ 2.08
VPS8Q8N3P4 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC28.06■■■□□ 2.08
VPS8Q8N3P4 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC28.06■■■□□ 2.08
VPS8Q8N3P4 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC28.06■■■□□ 2.08
VPS8Q8N3P4 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC28.06■■■□□ 2.08
VPS8Q8N3P4 RBM17P3-201ENST00000417687 1192 ntBASIC28.06■■■□□ 2.08
VPS8Q8N3P4 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC28.06■■■□□ 2.08
VPS8Q8N3P4 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC28.06■■■□□ 2.08
VPS8Q8N3P4 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC28.06■■■□□ 2.08
VPS8Q8N3P4 MNT-208ENST00000575394 606 ntTSL 4 BASIC28.06■■■□□ 2.08
VPS8Q8N3P4 AC008608.2-201ENST00000606089 416 ntBASIC28.06■■■□□ 2.08
VPS8Q8N3P4 AC019129.2-201ENST00000609837 1235 ntBASIC28.06■■■□□ 2.08
VPS8Q8N3P4 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC28.06■■■□□ 2.08
VPS8Q8N3P4 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC28.06■■■□□ 2.08
VPS8Q8N3P4 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC28.05■■■□□ 2.08
VPS8Q8N3P4 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC28.05■■■□□ 2.08
VPS8Q8N3P4 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC28.05■■■□□ 2.08
VPS8Q8N3P4 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC28.05■■■□□ 2.08
VPS8Q8N3P4 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC28.05■■■□□ 2.08
VPS8Q8N3P4 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC28.05■■■□□ 2.08
VPS8Q8N3P4 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC28.05■■■□□ 2.08
VPS8Q8N3P4 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC28.05■■■□□ 2.08
VPS8Q8N3P4 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC28.05■■■□□ 2.08
VPS8Q8N3P4 SLC25A6P4-201ENST00000586535 553 ntBASIC28.05■■■□□ 2.08
VPS8Q8N3P4 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC28.05■■■□□ 2.08
VPS8Q8N3P4 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC28.04■■■□□ 2.08
VPS8Q8N3P4 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC28.04■■■□□ 2.08
VPS8Q8N3P4 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC28.04■■■□□ 2.08
VPS8Q8N3P4 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC28.04■■■□□ 2.08
VPS8Q8N3P4 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC28.04■■■□□ 2.08
VPS8Q8N3P4 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC28.04■■■□□ 2.08
VPS8Q8N3P4 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC28.04■■■□□ 2.08
VPS8Q8N3P4 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC28.04■■■□□ 2.08
VPS8Q8N3P4 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC28.04■■■□□ 2.08
VPS8Q8N3P4 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC28.04■■■□□ 2.08
VPS8Q8N3P4 AL355877.3-201ENST00000622820 899 ntBASIC28.04■■■□□ 2.08
VPS8Q8N3P4 MYH7B-209ENST00000618182 6197 ntAPPRIS ALT2 TSL 5 BASIC28.04■■■□□ 2.08
VPS8Q8N3P4 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC28.04■■■□□ 2.08
VPS8Q8N3P4 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC28.04■■■□□ 2.08
VPS8Q8N3P4 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC28.04■■■□□ 2.08
VPS8Q8N3P4 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC28.04■■■□□ 2.08
VPS8Q8N3P4 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC28.04■■■□□ 2.08
VPS8Q8N3P4 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC28.04■■■□□ 2.08
VPS8Q8N3P4 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC28.03■■■□□ 2.08
VPS8Q8N3P4 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC28.03■■■□□ 2.08
VPS8Q8N3P4 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC28.03■■■□□ 2.08
VPS8Q8N3P4 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC28.03■■■□□ 2.08
VPS8Q8N3P4 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC28.03■■■□□ 2.08
VPS8Q8N3P4 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC28.03■■■□□ 2.08
VPS8Q8N3P4 AC009078.2-202ENST00000463353 338 ntBASIC28.03■■■□□ 2.08
VPS8Q8N3P4 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC28.03■■■□□ 2.08
VPS8Q8N3P4 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC28.03■■■□□ 2.08
VPS8Q8N3P4 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC28.03■■■□□ 2.08
VPS8Q8N3P4 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC28.03■■■□□ 2.08
VPS8Q8N3P4 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC28.03■■■□□ 2.08
VPS8Q8N3P4 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC28.03■■■□□ 2.08
VPS8Q8N3P4 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC28.03■■■□□ 2.08
VPS8Q8N3P4 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC28.03■■■□□ 2.08
VPS8Q8N3P4 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC28.03■■■□□ 2.08
VPS8Q8N3P4 RAP2A-201ENST00000245304 5487 ntAPPRIS P1 TSL 1 (best) BASIC28.03■■■□□ 2.08
VPS8Q8N3P4 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC28.03■■■□□ 2.08
VPS8Q8N3P4 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC28.02■■■□□ 2.08
VPS8Q8N3P4 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC28.02■■■□□ 2.08
VPS8Q8N3P4 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC28.02■■■□□ 2.08
VPS8Q8N3P4 ABCD1P5-201ENST00000445663 754 ntBASIC28.02■■■□□ 2.08
VPS8Q8N3P4 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC28.02■■■□□ 2.08
VPS8Q8N3P4 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC28.02■■■□□ 2.08
VPS8Q8N3P4 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC28.02■■■□□ 2.08
VPS8Q8N3P4 MIF4GD-205ENST00000578305 569 ntTSL 5 BASIC28.02■■■□□ 2.08
VPS8Q8N3P4 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC28.02■■■□□ 2.08
VPS8Q8N3P4 AD001527.2-201ENST00000622994 785 ntBASIC28.02■■■□□ 2.08
VPS8Q8N3P4 C16orf72-201ENST00000327827 5953 ntAPPRIS P1 TSL 1 (best) BASIC28.02■■■□□ 2.08
VPS8Q8N3P4 AC023830.1-201ENST00000569678 1543 ntTSL 2 BASIC28.02■■■□□ 2.08
VPS8Q8N3P4 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC28.02■■■□□ 2.08
VPS8Q8N3P4 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC28.02■■■□□ 2.08
VPS8Q8N3P4 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC28.02■■■□□ 2.08
Retrieved 100 of 98,524 protein–RNA pairs in 35.2 ms