Protein–RNA interactions for Protein: Q02539

HIST1H1A, Histone H1.1, humanhuman

Predicted RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIST1H1AQ02539 MYO1D-201ENST00000318217 5563 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
HIST1H1AQ02539 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
HIST1H1AQ02539 ZBTB5-201ENST00000307750 4627 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
HIST1H1AQ02539 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC13.84□□□□□ -0.19
HIST1H1AQ02539 AL512625.1-201ENST00000305709 2541 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
HIST1H1AQ02539 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
HIST1H1AQ02539 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC13.83□□□□□ -0.19
HIST1H1AQ02539 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.19
HIST1H1AQ02539 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC13.83□□□□□ -0.19
HIST1H1AQ02539 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC13.83□□□□□ -0.19
HIST1H1AQ02539 CBSL-202ENST00000617706 2563 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.19
HIST1H1AQ02539 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.19
HIST1H1AQ02539 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC13.83□□□□□ -0.19
HIST1H1AQ02539 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.19
HIST1H1AQ02539 CD276-203ENST00000537340 2439 ntTSL 2 BASIC13.83□□□□□ -0.19
HIST1H1AQ02539 TRA2A-202ENST00000392502 2229 ntAPPRIS ALT2 TSL 2 BASIC13.83□□□□□ -0.2
HIST1H1AQ02539 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC13.83□□□□□ -0.2
HIST1H1AQ02539 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
HIST1H1AQ02539 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
HIST1H1AQ02539 TPBG-203ENST00000543496 2881 ntAPPRIS P1 TSL 2 BASIC13.83□□□□□ -0.2
HIST1H1AQ02539 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC13.83□□□□□ -0.2
HIST1H1AQ02539 ZBTB16-202ENST00000392996 2287 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
HIST1H1AQ02539 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
HIST1H1AQ02539 POMT1-208ENST00000423007 3320 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
HIST1H1AQ02539 SLC12A5-201ENST00000243964 6061 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
HIST1H1AQ02539 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC13.83□□□□□ -0.2
HIST1H1AQ02539 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
HIST1H1AQ02539 PURB-201ENST00000395699 9069 ntAPPRIS P1 BASIC13.83□□□□□ -0.2
HIST1H1AQ02539 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
HIST1H1AQ02539 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
HIST1H1AQ02539 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC13.83□□□□□ -0.2
HIST1H1AQ02539 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC13.83□□□□□ -0.2
HIST1H1AQ02539 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
HIST1H1AQ02539 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC13.83□□□□□ -0.2
HIST1H1AQ02539 MIR564-202ENST00000385049 94 ntBASIC13.83□□□□□ -0.2
HIST1H1AQ02539 MIR718-201ENST00000390190 70 ntBASIC13.83□□□□□ -0.2
HIST1H1AQ02539 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC13.83□□□□□ -0.2
HIST1H1AQ02539 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC13.83□□□□□ -0.2
HIST1H1AQ02539 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC13.83□□□□□ -0.2
HIST1H1AQ02539 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC13.83□□□□□ -0.2
HIST1H1AQ02539 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC13.83□□□□□ -0.2
HIST1H1AQ02539 CTNNB1-210ENST00000453024 2841 ntTSL 2 BASIC13.83□□□□□ -0.2
HIST1H1AQ02539 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
HIST1H1AQ02539 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
HIST1H1AQ02539 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
HIST1H1AQ02539 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
HIST1H1AQ02539 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
HIST1H1AQ02539 ANKMY1-202ENST00000361678 2499 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
HIST1H1AQ02539 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC13.83□□□□□ -0.2
HIST1H1AQ02539 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC13.83□□□□□ -0.2
HIST1H1AQ02539 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
HIST1H1AQ02539 AC034236.2-201ENST00000606662 1610 ntBASIC13.82□□□□□ -0.2
HIST1H1AQ02539 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC13.82□□□□□ -0.2
HIST1H1AQ02539 ITSN1-209ENST00000399352 5408 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
HIST1H1AQ02539 MLEC-201ENST00000228506 6626 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
HIST1H1AQ02539 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
HIST1H1AQ02539 FOLH1-201ENST00000256999 2635 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
HIST1H1AQ02539 CCNI2-204ENST00000614847 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
HIST1H1AQ02539 COL18A1-203ENST00000359759 6586 ntAPPRIS ALT2 TSL 5 BASIC13.82□□□□□ -0.2
HIST1H1AQ02539 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC13.82□□□□□ -0.2
HIST1H1AQ02539 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC13.82□□□□□ -0.2
HIST1H1AQ02539 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
HIST1H1AQ02539 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC13.82□□□□□ -0.2
HIST1H1AQ02539 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC13.82□□□□□ -0.2
HIST1H1AQ02539 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
HIST1H1AQ02539 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC13.82□□□□□ -0.2
HIST1H1AQ02539 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC13.82□□□□□ -0.2
HIST1H1AQ02539 AP000593.1-201ENST00000393668 712 ntBASIC13.82□□□□□ -0.2
HIST1H1AQ02539 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC13.82□□□□□ -0.2
HIST1H1AQ02539 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC13.82□□□□□ -0.2
HIST1H1AQ02539 CA15P1-201ENST00000481698 905 ntBASIC13.82□□□□□ -0.2
HIST1H1AQ02539 AC092718.1-201ENST00000501068 1088 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
HIST1H1AQ02539 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC13.82□□□□□ -0.2
HIST1H1AQ02539 AP003071.4-201ENST00000562276 1284 ntBASIC13.82□□□□□ -0.2
HIST1H1AQ02539 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC13.82□□□□□ -0.2
HIST1H1AQ02539 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC13.82□□□□□ -0.2
HIST1H1AQ02539 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC13.82□□□□□ -0.2
HIST1H1AQ02539 AC138028.4-201ENST00000564984 1845 ntBASIC13.82□□□□□ -0.2
HIST1H1AQ02539 NOMO2-211ENST00000621364 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
HIST1H1AQ02539 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
HIST1H1AQ02539 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
HIST1H1AQ02539 THEG-201ENST00000342640 1877 ntAPPRIS P4 TSL 1 (best) BASIC13.82□□□□□ -0.2
HIST1H1AQ02539 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
HIST1H1AQ02539 MST1L-201ENST00000442552 2185 ntBASIC13.82□□□□□ -0.2
HIST1H1AQ02539 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC13.82□□□□□ -0.2
HIST1H1AQ02539 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC13.82□□□□□ -0.2
HIST1H1AQ02539 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
HIST1H1AQ02539 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
HIST1H1AQ02539 STK35-201ENST00000381482 6685 ntAPPRIS P1 TSL 5 BASIC13.82□□□□□ -0.2
HIST1H1AQ02539 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC13.82□□□□□ -0.2
HIST1H1AQ02539 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC13.82□□□□□ -0.2
HIST1H1AQ02539 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC13.82□□□□□ -0.2
HIST1H1AQ02539 VAV3-210ENST00000527011 4510 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
HIST1H1AQ02539 RNF19A-201ENST00000341084 4285 ntAPPRIS P1 TSL 5 BASIC13.81□□□□□ -0.2
HIST1H1AQ02539 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
HIST1H1AQ02539 ZNF385C-205ENST00000618554 2596 ntTSL 5 BASIC13.81□□□□□ -0.2
HIST1H1AQ02539 ADGRB2-206ENST00000398556 4879 ntAPPRIS ALT2 TSL 5 BASIC13.81□□□□□ -0.2
HIST1H1AQ02539 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
HIST1H1AQ02539 TJP2-202ENST00000377245 4611 ntAPPRIS P4 TSL 1 (best) BASIC13.81□□□□□ -0.2
HIST1H1AQ02539 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC13.81□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 39.9 ms