Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 FIBIN-201ENST00000318627 1938 ntAPPRIS P1 BASIC18.84■□□□□ 0.61
HDAC4P56524 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC18.84■□□□□ 0.61
HDAC4P56524 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC18.84■□□□□ 0.61
HDAC4P56524 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC18.84■□□□□ 0.61
HDAC4P56524 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
HDAC4P56524 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
HDAC4P56524 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC18.84■□□□□ 0.61
HDAC4P56524 ASPM-201ENST00000294732 6132 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
HDAC4P56524 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC18.84■□□□□ 0.61
HDAC4P56524 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC18.84■□□□□ 0.61
HDAC4P56524 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
HDAC4P56524 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
HDAC4P56524 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
HDAC4P56524 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
HDAC4P56524 DUTP2-201ENST00000519164 463 ntBASIC18.84■□□□□ 0.61
HDAC4P56524 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC18.84■□□□□ 0.61
HDAC4P56524 NTF6B-201ENST00000591913 560 ntBASIC18.84■□□□□ 0.61
HDAC4P56524 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC18.84■□□□□ 0.61
HDAC4P56524 AC004263.2-201ENST00000617183 678 ntBASIC18.84■□□□□ 0.61
HDAC4P56524 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC18.84■□□□□ 0.61
HDAC4P56524 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC18.84■□□□□ 0.61
HDAC4P56524 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
HDAC4P56524 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC18.84■□□□□ 0.61
HDAC4P56524 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC18.84■□□□□ 0.61
HDAC4P56524 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC18.84■□□□□ 0.61
HDAC4P56524 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
HDAC4P56524 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
HDAC4P56524 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
HDAC4P56524 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC18.84■□□□□ 0.61
HDAC4P56524 LTB4R2-202ENST00000528054 3092 ntBASIC18.84■□□□□ 0.61
HDAC4P56524 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC18.84■□□□□ 0.61
HDAC4P56524 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
HDAC4P56524 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
HDAC4P56524 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
HDAC4P56524 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
HDAC4P56524 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC18.84■□□□□ 0.61
HDAC4P56524 ARNT-212ENST00000515192 2892 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
HDAC4P56524 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
HDAC4P56524 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC18.83■□□□□ 0.61
HDAC4P56524 CRELD2-201ENST00000328268 1357 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.61
HDAC4P56524 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC18.83■□□□□ 0.61
HDAC4P56524 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
HDAC4P56524 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC18.83■□□□□ 0.61
HDAC4P56524 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC18.83■□□□□ 0.61
HDAC4P56524 AC068880.1-201ENST00000507289 2297 ntBASIC18.83■□□□□ 0.61
HDAC4P56524 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC18.83■□□□□ 0.6
HDAC4P56524 IGHGP-201ENST00000390555 1178 ntBASIC18.83■□□□□ 0.6
HDAC4P56524 AL031133.1-201ENST00000406807 723 ntBASIC18.83■□□□□ 0.6
HDAC4P56524 AP003733.1-201ENST00000491725 852 ntBASIC18.83■□□□□ 0.6
HDAC4P56524 MOK-234ENST00000524370 1165 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
HDAC4P56524 RNF126P1-202ENST00000569893 925 ntBASIC18.83■□□□□ 0.6
HDAC4P56524 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC18.83■□□□□ 0.6
HDAC4P56524 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC18.83■□□□□ 0.6
HDAC4P56524 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
HDAC4P56524 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
HDAC4P56524 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
HDAC4P56524 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC18.83■□□□□ 0.6
HDAC4P56524 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
HDAC4P56524 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.6
HDAC4P56524 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC18.83■□□□□ 0.6
HDAC4P56524 MED25-212ENST00000618715 1467 ntTSL 5 BASIC18.83■□□□□ 0.6
HDAC4P56524 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC18.83■□□□□ 0.6
HDAC4P56524 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.6
HDAC4P56524 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
HDAC4P56524 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
HDAC4P56524 P2RY6-207ENST00000538328 1425 ntAPPRIS P1 TSL 3 BASIC18.83■□□□□ 0.6
HDAC4P56524 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
HDAC4P56524 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
HDAC4P56524 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
HDAC4P56524 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
HDAC4P56524 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
HDAC4P56524 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
HDAC4P56524 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC18.82■□□□□ 0.6
HDAC4P56524 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC18.82■□□□□ 0.6
HDAC4P56524 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
HDAC4P56524 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
HDAC4P56524 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC18.82■□□□□ 0.6
HDAC4P56524 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC18.82■□□□□ 0.6
HDAC4P56524 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
HDAC4P56524 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
HDAC4P56524 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC18.82■□□□□ 0.6
HDAC4P56524 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC18.82■□□□□ 0.6
HDAC4P56524 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
HDAC4P56524 UBL5-201ENST00000358666 513 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
HDAC4P56524 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC18.82■□□□□ 0.6
HDAC4P56524 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC18.82■□□□□ 0.6
HDAC4P56524 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
HDAC4P56524 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
HDAC4P56524 PPOX-214ENST00000535223 664 ntTSL 3 BASIC18.82■□□□□ 0.6
HDAC4P56524 CLN6-204ENST00000564752 900 ntTSL 3 BASIC18.82■□□□□ 0.6
HDAC4P56524 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC18.82■□□□□ 0.6
HDAC4P56524 CLN6-214ENST00000636314 442 ntTSL 3 BASIC18.82■□□□□ 0.6
HDAC4P56524 FBXL7-202ENST00000504595 4562 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
HDAC4P56524 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC18.82■□□□□ 0.6
HDAC4P56524 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC18.82■□□□□ 0.6
HDAC4P56524 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC18.82■□□□□ 0.6
HDAC4P56524 PDE1C-206ENST00000396193 5109 ntAPPRIS P4 TSL 2 BASIC18.82■□□□□ 0.6
HDAC4P56524 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC18.82■□□□□ 0.6
HDAC4P56524 HLA-DQB1-201ENST00000374943 1656 ntBASIC18.82■□□□□ 0.6
HDAC4P56524 SPSB3-201ENST00000301717 1449 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 42.4 ms