Protein–RNA interactions for Protein: P55854

SUMO3, Small ubiquitin-related modifier 3, humanhuman

Predicted RBP Predictions only

Length 103 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SUMO3P55854 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC16.33■□□□□ 0.2
SUMO3P55854 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC16.33■□□□□ 0.2
SUMO3P55854 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
SUMO3P55854 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
SUMO3P55854 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC16.33■□□□□ 0.2
SUMO3P55854 MOCS2-202ENST00000396954 1785 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
SUMO3P55854 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC16.33■□□□□ 0.2
SUMO3P55854 HR-201ENST00000312841 5351 ntTSL 5 BASIC16.33■□□□□ 0.2
SUMO3P55854 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC16.33■□□□□ 0.2
SUMO3P55854 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.2
SUMO3P55854 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
SUMO3P55854 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC16.33■□□□□ 0.2
SUMO3P55854 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.2
SUMO3P55854 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
SUMO3P55854 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
SUMO3P55854 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC16.33■□□□□ 0.2
SUMO3P55854 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
SUMO3P55854 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC16.32■□□□□ 0.2
SUMO3P55854 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
SUMO3P55854 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC16.32■□□□□ 0.2
SUMO3P55854 FNBP1-202ENST00000420781 5410 ntAPPRIS ALT1 TSL 1 (best) BASIC16.32■□□□□ 0.2
SUMO3P55854 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC16.32■□□□□ 0.2
SUMO3P55854 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
SUMO3P55854 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
SUMO3P55854 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
SUMO3P55854 PBXIP1-201ENST00000368460 1175 ntAPPRIS ALT2 TSL 3 BASIC16.32■□□□□ 0.2
SUMO3P55854 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
SUMO3P55854 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
SUMO3P55854 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
SUMO3P55854 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
SUMO3P55854 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
SUMO3P55854 CHCHD2P8-201ENST00000429873 447 ntBASIC16.32■□□□□ 0.2
SUMO3P55854 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC16.32■□□□□ 0.2
SUMO3P55854 RN7SL606P-201ENST00000472779 293 ntBASIC16.32■□□□□ 0.2
SUMO3P55854 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC16.32■□□□□ 0.2
SUMO3P55854 BOC-211ENST00000484034 1286 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
SUMO3P55854 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
SUMO3P55854 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
SUMO3P55854 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC16.32■□□□□ 0.2
SUMO3P55854 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC16.32■□□□□ 0.2
SUMO3P55854 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
SUMO3P55854 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC16.32■□□□□ 0.2
SUMO3P55854 GOLGA2P7-203ENST00000557881 896 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
SUMO3P55854 NT5C-211ENST00000582170 653 ntTSL 3 BASIC16.32■□□□□ 0.2
SUMO3P55854 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC16.32■□□□□ 0.2
SUMO3P55854 AL592071.1-201ENST00000611956 408 ntBASIC16.32■□□□□ 0.2
SUMO3P55854 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC16.32■□□□□ 0.2
SUMO3P55854 ANKRD9-201ENST00000286918 6727 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
SUMO3P55854 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC16.32■□□□□ 0.2
SUMO3P55854 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
SUMO3P55854 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC16.32■□□□□ 0.2
SUMO3P55854 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
SUMO3P55854 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
SUMO3P55854 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
SUMO3P55854 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC16.31■□□□□ 0.2
SUMO3P55854 C18orf8-208ENST00000590868 2002 ntTSL 2 BASIC16.31■□□□□ 0.2
SUMO3P55854 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
SUMO3P55854 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SUMO3P55854 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC16.31■□□□□ 0.2
SUMO3P55854 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC16.31■□□□□ 0.2
SUMO3P55854 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
SUMO3P55854 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
SUMO3P55854 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SUMO3P55854 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SUMO3P55854 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SUMO3P55854 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC16.31■□□□□ 0.2
SUMO3P55854 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC16.31■□□□□ 0.2
SUMO3P55854 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC16.31■□□□□ 0.2
SUMO3P55854 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SUMO3P55854 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
SUMO3P55854 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
SUMO3P55854 SDCBP2-201ENST00000339987 1404 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SUMO3P55854 JMJD7-201ENST00000397299 1416 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SUMO3P55854 BCL2L10-201ENST00000260442 1249 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
SUMO3P55854 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
SUMO3P55854 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC16.31■□□□□ 0.2
SUMO3P55854 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SUMO3P55854 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
SUMO3P55854 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
SUMO3P55854 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC16.31■□□□□ 0.2
SUMO3P55854 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
SUMO3P55854 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC16.31■□□□□ 0.2
SUMO3P55854 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC16.31■□□□□ 0.2
SUMO3P55854 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC16.31■□□□□ 0.2
SUMO3P55854 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC16.31■□□□□ 0.2
SUMO3P55854 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC16.31■□□□□ 0.2
SUMO3P55854 AC008764.6-201ENST00000595909 2069 ntBASIC16.31■□□□□ 0.2
SUMO3P55854 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SUMO3P55854 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC16.31■□□□□ 0.2
SUMO3P55854 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
SUMO3P55854 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC16.31■□□□□ 0.2
SUMO3P55854 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SUMO3P55854 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SUMO3P55854 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SUMO3P55854 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SUMO3P55854 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SUMO3P55854 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
SUMO3P55854 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC16.3■□□□□ 0.2
SUMO3P55854 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
SUMO3P55854 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 71.2 ms