Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC17.24■□□□□ 0.35
MSX2P35548 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC17.24■□□□□ 0.35
MSX2P35548 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC17.24■□□□□ 0.35
MSX2P35548 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC17.24■□□□□ 0.35
MSX2P35548 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC17.24■□□□□ 0.35
MSX2P35548 CKBP1-201ENST00000565489 1086 ntBASIC17.24■□□□□ 0.35
MSX2P35548 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC17.24■□□□□ 0.35
MSX2P35548 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC17.24■□□□□ 0.35
MSX2P35548 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
MSX2P35548 LRP8-207ENST00000465675 2670 ntTSL 2 BASIC17.24■□□□□ 0.35
MSX2P35548 MAP6-202ENST00000434603 4329 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
MSX2P35548 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
MSX2P35548 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
MSX2P35548 PROSER1-201ENST00000352251 5168 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
MSX2P35548 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
MSX2P35548 CACNA1A-201ENST00000360228 8627 ntAPPRIS P4 TSL 1 (best) BASIC17.24■□□□□ 0.35
MSX2P35548 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC17.24■□□□□ 0.35
MSX2P35548 PCDHB19P-201ENST00000570871 2371 ntBASIC17.24■□□□□ 0.35
MSX2P35548 PHTF1-205ENST00000393357 3244 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
MSX2P35548 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
MSX2P35548 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC17.24■□□□□ 0.35
MSX2P35548 B4GALNT4-201ENST00000329962 3444 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
MSX2P35548 MAP4K1-201ENST00000396857 2653 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
MSX2P35548 PACS1-201ENST00000320580 4392 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
MSX2P35548 C15orf38-AP3S2-201ENST00000398333 2439 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
MSX2P35548 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
MSX2P35548 AC079328.2-201ENST00000561241 3354 ntBASIC17.23■□□□□ 0.35
MSX2P35548 PTPRF-209ENST00000438120 6377 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
MSX2P35548 AC106886.4-201ENST00000623557 2502 ntBASIC17.23■□□□□ 0.35
MSX2P35548 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
MSX2P35548 AC027796.3-201ENST00000572919 4753 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
MSX2P35548 HS6ST2-204ENST00000521489 2607 ntTSL 5 BASIC17.23■□□□□ 0.35
MSX2P35548 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC17.23■□□□□ 0.35
MSX2P35548 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC17.23■□□□□ 0.35
MSX2P35548 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
MSX2P35548 ZNF354C-201ENST00000315475 5411 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
MSX2P35548 AES-201ENST00000221561 1884 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
MSX2P35548 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
MSX2P35548 RNF169-201ENST00000299563 7823 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
MSX2P35548 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC17.23■□□□□ 0.35
MSX2P35548 AC093010.1-201ENST00000473625 1624 ntBASIC17.23■□□□□ 0.35
MSX2P35548 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
MSX2P35548 AC004951.3-201ENST00000418645 1148 ntBASIC17.23■□□□□ 0.35
MSX2P35548 A3GALT2-201ENST00000442999 1023 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
MSX2P35548 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC17.23■□□□□ 0.35
MSX2P35548 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
MSX2P35548 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC17.23■□□□□ 0.35
MSX2P35548 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC17.23■□□□□ 0.35
MSX2P35548 ABBA01031674.1-201ENST00000635145 728 ntBASIC17.23■□□□□ 0.35
MSX2P35548 SLC39A8-201ENST00000356736 3144 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
MSX2P35548 DHRS4L2-201ENST00000335125 1370 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
MSX2P35548 VASH1-201ENST00000167106 5728 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
MSX2P35548 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC17.23■□□□□ 0.35
MSX2P35548 RASSF5-205ENST00000581503 5586 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
MSX2P35548 LRP4-201ENST00000378623 8076 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
MSX2P35548 SRGAP2B-207ENST00000641863 2367 ntAPPRIS P5 BASIC17.23■□□□□ 0.35
MSX2P35548 TLE3-205ENST00000539550 2464 ntTSL 2 BASIC17.23■□□□□ 0.35
MSX2P35548 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
MSX2P35548 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
MSX2P35548 RNF31-201ENST00000324103 3627 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
MSX2P35548 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
MSX2P35548 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
MSX2P35548 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC17.22■□□□□ 0.35
MSX2P35548 ZBTB9-201ENST00000395064 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
MSX2P35548 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
MSX2P35548 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
MSX2P35548 RGS11-202ENST00000316163 2376 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
MSX2P35548 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC17.22■□□□□ 0.35
MSX2P35548 VAV3-210ENST00000527011 4510 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
MSX2P35548 VPS37A-201ENST00000324849 4906 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
MSX2P35548 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC17.22■□□□□ 0.35
MSX2P35548 DENND1A-202ENST00000373620 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
MSX2P35548 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC17.22■□□□□ 0.35
MSX2P35548 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
MSX2P35548 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC17.22■□□□□ 0.35
MSX2P35548 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
MSX2P35548 KRASP1-201ENST00000407852 552 ntBASIC17.22■□□□□ 0.35
MSX2P35548 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
MSX2P35548 ELP6-205ENST00000439305 880 ntTSL 2 BASIC17.22■□□□□ 0.35
MSX2P35548 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC17.22■□□□□ 0.35
MSX2P35548 KRT16P5-201ENST00000455284 522 ntBASIC17.22■□□□□ 0.35
MSX2P35548 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
MSX2P35548 RPS2P4-201ENST00000476944 856 ntBASIC17.22■□□□□ 0.35
MSX2P35548 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC17.22■□□□□ 0.35
MSX2P35548 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC17.22■□□□□ 0.35
MSX2P35548 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC17.22■□□□□ 0.35
MSX2P35548 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC17.22■□□□□ 0.35
MSX2P35548 UNC93B5-201ENST00000530315 699 ntBASIC17.22■□□□□ 0.35
MSX2P35548 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC17.22■□□□□ 0.35
MSX2P35548 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
MSX2P35548 KLC1-202ENST00000334553 2524 ntTSL 5 BASIC17.22■□□□□ 0.35
MSX2P35548 ABHD15-201ENST00000307201 3592 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
MSX2P35548 COL27A1-201ENST00000356083 7790 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
MSX2P35548 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
MSX2P35548 CTNNB1-210ENST00000453024 2841 ntTSL 2 BASIC17.22■□□□□ 0.35
MSX2P35548 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
MSX2P35548 MAP7-209ENST00000618822 4497 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
MSX2P35548 LAT2-204ENST00000398475 2453 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
MSX2P35548 MAP3K9-206ENST00000555993 4449 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
MSX2P35548 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC17.21■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 32.4 ms