Protein–RNA interactions for Protein: P16234

PDGFRA, Platelet-derived growth factor receptor alpha, humanhuman

Predictions only

Length 1,089 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFRAP16234 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
PDGFRAP16234 POMC-204ENST00000405623 1426 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
PDGFRAP16234 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
PDGFRAP16234 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
PDGFRAP16234 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
PDGFRAP16234 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
PDGFRAP16234 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
PDGFRAP16234 MIR662-201ENST00000384847 95 ntBASIC18.94■□□□□ 0.62
PDGFRAP16234 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC18.94■□□□□ 0.62
PDGFRAP16234 SPDYE13P-201ENST00000445314 798 ntBASIC18.94■□□□□ 0.62
PDGFRAP16234 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
PDGFRAP16234 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC18.94■□□□□ 0.62
PDGFRAP16234 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC18.94■□□□□ 0.62
PDGFRAP16234 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC18.94■□□□□ 0.62
PDGFRAP16234 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC18.94■□□□□ 0.62
PDGFRAP16234 DBP-204ENST00000599385 709 ntTSL 3 BASIC18.94■□□□□ 0.62
PDGFRAP16234 AC091076.1-201ENST00000610741 619 ntBASIC18.94■□□□□ 0.62
PDGFRAP16234 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC18.94■□□□□ 0.62
PDGFRAP16234 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC18.94■□□□□ 0.62
PDGFRAP16234 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
PDGFRAP16234 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
PDGFRAP16234 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC18.94■□□□□ 0.62
PDGFRAP16234 AC005332.1-201ENST00000577698 1310 ntBASIC18.94■□□□□ 0.62
PDGFRAP16234 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC18.94■□□□□ 0.62
PDGFRAP16234 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
PDGFRAP16234 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC18.94■□□□□ 0.62
PDGFRAP16234 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC18.94■□□□□ 0.62
PDGFRAP16234 SYNM-202ENST00000336292 7394 ntAPPRIS P4 TSL 1 (best) BASIC18.94■□□□□ 0.62
PDGFRAP16234 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC18.93■□□□□ 0.62
PDGFRAP16234 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
PDGFRAP16234 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
PDGFRAP16234 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC18.93■□□□□ 0.62
PDGFRAP16234 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
PDGFRAP16234 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC18.93■□□□□ 0.62
PDGFRAP16234 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC18.93■□□□□ 0.62
PDGFRAP16234 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
PDGFRAP16234 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC18.93■□□□□ 0.62
PDGFRAP16234 SPRED3-201ENST00000338502 4778 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
PDGFRAP16234 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
PDGFRAP16234 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC18.93■□□□□ 0.62
PDGFRAP16234 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
PDGFRAP16234 FBXO41-205ENST00000521871 7336 ntAPPRIS P1 TSL 5 BASIC18.93■□□□□ 0.62
PDGFRAP16234 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
PDGFRAP16234 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC18.93■□□□□ 0.62
PDGFRAP16234 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
PDGFRAP16234 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
PDGFRAP16234 DUTP2-201ENST00000519164 463 ntBASIC18.93■□□□□ 0.62
PDGFRAP16234 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC18.93■□□□□ 0.62
PDGFRAP16234 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC18.93■□□□□ 0.62
PDGFRAP16234 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC18.93■□□□□ 0.62
PDGFRAP16234 ZNF575-205ENST00000601282 1086 ntAPPRIS P1 TSL 2 BASIC18.93■□□□□ 0.62
PDGFRAP16234 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC18.93■□□□□ 0.62
PDGFRAP16234 CLN6-214ENST00000636314 442 ntTSL 3 BASIC18.93■□□□□ 0.62
PDGFRAP16234 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
PDGFRAP16234 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC18.93■□□□□ 0.62
PDGFRAP16234 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC18.93■□□□□ 0.62
PDGFRAP16234 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC18.93■□□□□ 0.62
PDGFRAP16234 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC18.93■□□□□ 0.62
PDGFRAP16234 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
PDGFRAP16234 AC068880.1-201ENST00000507289 2297 ntBASIC18.93■□□□□ 0.62
PDGFRAP16234 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC18.93■□□□□ 0.62
PDGFRAP16234 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
PDGFRAP16234 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC18.93■□□□□ 0.62
PDGFRAP16234 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC18.92■□□□□ 0.62
PDGFRAP16234 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
PDGFRAP16234 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
PDGFRAP16234 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC18.92■□□□□ 0.62
PDGFRAP16234 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
PDGFRAP16234 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC18.92■□□□□ 0.62
PDGFRAP16234 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC18.92■□□□□ 0.62
PDGFRAP16234 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC18.92■□□□□ 0.62
PDGFRAP16234 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC18.92■□□□□ 0.62
PDGFRAP16234 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC18.92■□□□□ 0.62
PDGFRAP16234 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC18.92■□□□□ 0.62
PDGFRAP16234 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
PDGFRAP16234 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
PDGFRAP16234 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
PDGFRAP16234 OXSR1-201ENST00000311806 4553 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
PDGFRAP16234 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
PDGFRAP16234 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
PDGFRAP16234 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
PDGFRAP16234 TTTY14-203ENST00000447937 920 ntTSL 3 BASIC18.92■□□□□ 0.62
PDGFRAP16234 AP003733.1-201ENST00000491725 852 ntBASIC18.92■□□□□ 0.62
PDGFRAP16234 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC18.92■□□□□ 0.62
PDGFRAP16234 AL136038.3-201ENST00000561909 1096 ntBASIC18.92■□□□□ 0.62
PDGFRAP16234 MNT-208ENST00000575394 606 ntTSL 4 BASIC18.92■□□□□ 0.62
PDGFRAP16234 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC18.92■□□□□ 0.62
PDGFRAP16234 AP000550.4-202ENST00000639755 178 ntBASIC18.92■□□□□ 0.62
PDGFRAP16234 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
PDGFRAP16234 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
PDGFRAP16234 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC18.92■□□□□ 0.62
PDGFRAP16234 RAB43-201ENST00000315150 4467 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
PDGFRAP16234 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC18.92■□□□□ 0.62
PDGFRAP16234 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
PDGFRAP16234 IER3-202ENST00000376377 1350 ntBASIC18.92■□□□□ 0.62
PDGFRAP16234 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
PDGFRAP16234 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
PDGFRAP16234 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC18.92■□□□□ 0.62
PDGFRAP16234 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC18.92■□□□□ 0.62
PDGFRAP16234 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC18.92■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 39.3 ms