Protein–RNA interactions for Protein: O15551

CLDN3, Claudin-3, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN3O15551 AL354751.1-201ENST00000412768 1863 ntBASIC19.69■□□□□ 0.74
CLDN3O15551 AC138932.1-201ENST00000534164 6830 ntBASIC19.69■□□□□ 0.74
CLDN3O15551 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
CLDN3O15551 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC19.69■□□□□ 0.74
CLDN3O15551 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC19.69■□□□□ 0.74
CLDN3O15551 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC19.69■□□□□ 0.74
CLDN3O15551 AC069368.1-202ENST00000437723 750 ntAPPRIS P1 TSL 5 BASIC19.69■□□□□ 0.74
CLDN3O15551 LINC00265-3P-201ENST00000447588 903 ntBASIC19.69■□□□□ 0.74
CLDN3O15551 TOB2P1-201ENST00000469761 992 ntBASIC19.69■□□□□ 0.74
CLDN3O15551 SELENOH-204ENST00000534355 818 ntAPPRIS P2 TSL 1 (best) BASIC19.69■□□□□ 0.74
CLDN3O15551 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC19.69■□□□□ 0.74
CLDN3O15551 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC19.69■□□□□ 0.74
CLDN3O15551 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC19.69■□□□□ 0.74
CLDN3O15551 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
CLDN3O15551 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC19.69■□□□□ 0.74
CLDN3O15551 BCL2-203ENST00000589955 5011 ntBASIC19.69■□□□□ 0.74
CLDN3O15551 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC19.69■□□□□ 0.74
CLDN3O15551 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC19.69■□□□□ 0.74
CLDN3O15551 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
CLDN3O15551 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
CLDN3O15551 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CLDN3O15551 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CLDN3O15551 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CLDN3O15551 SRSF1-208ENST00000584773 1317 ntTSL 5 BASIC19.69■□□□□ 0.74
CLDN3O15551 MAZ-212ENST00000568282 1593 ntTSL 5 BASIC19.69■□□□□ 0.74
CLDN3O15551 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CLDN3O15551 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CLDN3O15551 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
CLDN3O15551 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
CLDN3O15551 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CLDN3O15551 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CLDN3O15551 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CLDN3O15551 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CLDN3O15551 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC19.68■□□□□ 0.74
CLDN3O15551 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC19.68■□□□□ 0.74
CLDN3O15551 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC19.68■□□□□ 0.74
CLDN3O15551 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC19.68■□□□□ 0.74
CLDN3O15551 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
CLDN3O15551 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
CLDN3O15551 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC19.68■□□□□ 0.74
CLDN3O15551 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC19.68■□□□□ 0.74
CLDN3O15551 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CLDN3O15551 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC19.68■□□□□ 0.74
CLDN3O15551 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CLDN3O15551 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC19.68■□□□□ 0.74
CLDN3O15551 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CLDN3O15551 AC026471.1-201ENST00000564629 3026 ntBASIC19.68■□□□□ 0.74
CLDN3O15551 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CLDN3O15551 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
CLDN3O15551 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC19.68■□□□□ 0.74
CLDN3O15551 TAX1BP3-202ENST00000611779 1302 ntTSL 2 BASIC19.68■□□□□ 0.74
CLDN3O15551 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CLDN3O15551 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
CLDN3O15551 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
CLDN3O15551 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
CLDN3O15551 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC19.68■□□□□ 0.74
CLDN3O15551 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC19.68■□□□□ 0.74
CLDN3O15551 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
CLDN3O15551 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CLDN3O15551 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC19.67■□□□□ 0.74
CLDN3O15551 ASB7-203ENST00000558747 2133 ntTSL 5 BASIC19.67■□□□□ 0.74
CLDN3O15551 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC19.67■□□□□ 0.74
CLDN3O15551 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CLDN3O15551 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC19.67■□□□□ 0.74
CLDN3O15551 LENG8-AS1-201ENST00000416022 582 ntTSL 3 BASIC19.67■□□□□ 0.74
CLDN3O15551 MTCL1P1-201ENST00000446207 792 ntBASIC19.67■□□□□ 0.74
CLDN3O15551 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC19.67■□□□□ 0.74
CLDN3O15551 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
CLDN3O15551 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC19.67■□□□□ 0.74
CLDN3O15551 ZNF524-203ENST00000591046 1260 ntAPPRIS P1 BASIC19.67■□□□□ 0.74
CLDN3O15551 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
CLDN3O15551 AC008567.3-202ENST00000619671 859 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
CLDN3O15551 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC19.67■□□□□ 0.74
CLDN3O15551 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CLDN3O15551 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC19.67■□□□□ 0.74
CLDN3O15551 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
CLDN3O15551 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
CLDN3O15551 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
CLDN3O15551 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
CLDN3O15551 REXO1L9P-201ENST00000604264 2108 ntBASIC19.67■□□□□ 0.74
CLDN3O15551 AC233702.3-201ENST00000578656 1387 ntBASIC19.67■□□□□ 0.74
CLDN3O15551 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CLDN3O15551 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC19.67■□□□□ 0.74
CLDN3O15551 ANKRD9-201ENST00000286918 6727 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CLDN3O15551 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CLDN3O15551 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
CLDN3O15551 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
CLDN3O15551 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CLDN3O15551 EML3-217ENST00000531557 2509 ntTSL 5 BASIC19.66■□□□□ 0.74
CLDN3O15551 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CLDN3O15551 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC19.66■□□□□ 0.74
CLDN3O15551 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CLDN3O15551 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CLDN3O15551 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
CLDN3O15551 C1QC-203ENST00000374640 1163 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CLDN3O15551 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC19.66■□□□□ 0.74
CLDN3O15551 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC19.66■□□□□ 0.74
CLDN3O15551 AC246785.2-201ENST00000432512 513 ntBASIC19.66■□□□□ 0.74
CLDN3O15551 VENTXP7-201ENST00000475503 772 ntBASIC19.66■□□□□ 0.74
CLDN3O15551 AP000867.3-201ENST00000524675 377 ntBASIC19.66■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 42.7 ms